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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:96.2 nTPM
GTEx:100.4 nTPM
FANTOM5:226.3 Scaled Tags Per Million
Pig:52.5 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 96.2
Sample id Sample description nTPM
Putamen
nTPM: 96.2
2466 Female, age 79, unknown 112.1
1838 Male, age 80, right hemisphere 99.6
1937 Female, age 91, right hemisphere 98.3
2482 Female, age 94, left hemisphere 97.8
1829 Male, age 74, unknown 92.8
2489 Female, age 72, unknown 87.1
2647 Male, age 75, left hemisphere 85.9

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.4
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 100.4
Samples: 205

Max nTPM: 172.1
Min nTPM: 62.2
Std nTPM: 21.0
Median nTPM: 97.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 172.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 157.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 155.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 151.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 151.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 151.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 151.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 151.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 148.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 146.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 142.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 142.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 141.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 140.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 139.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 137.8
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 135.3
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 135.0
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 133.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 131.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 131.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 129.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 129.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 126.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 126.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 124.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 123.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 119.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 119.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 119.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 117.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 117.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 117.2
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 116.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 116.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 116.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 116.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 115.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 115.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 114.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 114.2
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 112.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 112.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 112.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 112.7
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 112.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 112.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 112.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 111.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 111.9
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 111.6
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 111.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 111.3
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 111.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 111.3
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 111.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 110.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 110.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 110.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 109.6
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 109.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 109.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 109.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 108.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 108.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 108.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 108.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 108.1
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 107.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 107.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 106.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 106.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 104.8
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 104.6
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 104.6
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 104.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 103.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 103.8
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 103.8
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 103.7
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 103.6
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 103.6
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 103.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 102.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 102.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 102.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 102.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 101.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 101.2
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 100.9
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 100.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 100.1
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 100.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 99.8
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 99.7
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 99.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 99.4
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 98.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 98.6
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 98.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 98.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 98.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 97.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 97.8
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 97.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 97.7
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 97.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 97.4
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 96.6
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 96.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 96.5
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 96.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 96.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 96.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 96.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 96.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 95.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 95.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 95.5
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 94.3
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 94.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 93.4
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 93.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 93.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 93.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 92.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 92.7
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 92.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 91.8
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 91.4
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 91.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 91.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 90.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 89.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 89.6
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 89.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 89.0
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 88.4
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 88.3
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 87.8
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 87.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 87.6
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 87.5
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 87.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 87.4
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 87.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 86.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 86.9
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 86.8
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 86.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 86.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 86.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 86.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 86.1
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 85.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 85.0
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 84.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 84.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 83.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 83.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 82.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 81.9
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 81.5
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 81.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 81.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 81.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 80.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 80.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 80.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 80.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 80.3
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 80.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 80.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 80.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 80.0
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 79.8
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 79.6
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 79.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 79.2
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 78.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 77.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 77.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 76.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 76.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 76.0
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 75.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 75.4
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 74.6
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 73.6
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 73.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 73.4
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 72.6
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 71.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 71.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 70.9
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 70.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 69.5
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 68.3
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 67.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 67.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 66.9
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 64.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 64.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 62.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 62.2
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 226.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 226.3
FF:10176-103C5 60 years, female 226.3

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 52.5
Pig sample Sample description nTPM
Putamen
nTPM: 52.5
Samples: 4

Max nTPM: 67.3
Min nTPM: 42.2
Sample A Female 49.9
Sample B Female 42.2
Sample C Male 67.3
Sample D Male 50.5

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