BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.8 nTPM
HPA:14.8 nTPM
GTEx:20.4 nTPM
FANTOM5:8.4 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:23.7 nTPM
Allen mouse:2.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.4
1781 Male, age 74, unknown 14.1
2846 Female, age 79, unknown 13.5
2290 Female, age 72, unknown 11.4
2289 Male, age 61, right hemisphere 10.5
1857 Female, age 85, left hemisphere 9.0
2288 Male, age 75, left hemisphere 7.9
1854 Male, age 80, left hemisphere 7.3
2481 Female, age 94, left hemisphere 1.6
Claustrum
nTPM: 11.5
2645 Female, age 72, unknown 17.9
2568 Male, age 61, both hemispheres 16.5
2284 Female, age 91, both hemispheres 15.6
2491 Male, age 75, both hemispheres 11.9
2292 Female, age 85, both hemispheres 10.2
2198 Male, age 80, both hemispheres 9.3
1956 Male, age 74, unknown 8.0
2196 Female, age 79, unknown 7.0
2392 Female, age 94, both hemispheres 6.6
Globus pallidus, externus
nTPM: 3.8
2567 Female, age 72, unknown 8.1
2646 Male, age 61, right hemisphere 3.8
2772 Female, age 79, unknown 3.8
2395 Male, age 75, both hemispheres 2.7
1996 Male, age 80, right hemisphere 0.8
Globus pallidus, internus
nTPM: 2.3
2566 Female, age 72, unknown 4.5
2111 Female, age 85, right hemisphere 3.9
1818 Male, age 74, unknown 3.6
2483 Female, age 94, right hemisphere 1.8
2037 Male, age 80, right hemisphere 1.0
2287 Male, age 75, right hemisphere 0.8
2778 Female, age 91, both hemispheres 0.5
Nucleus accumbens
nTPM: 7.6
1783 Male, age 74, unknown 13.4
1856 Female, age 91, right hemisphere 12.2
1806 Female, age 85, left hemisphere 11.2
2824 Male, age 61, right hemisphere 9.5
2698 Female, age 72, unknown 5.6
2286 Male, age 75, left hemisphere 5.1
2732 Male, age 80, right hemisphere 3.0
2391 Female, age 94, left hemisphere 0.6
Nucleus basalis of Meynert
nTPM: 5.7
2821 Male, age 75, both hemispheres 7.9
2484 Female, age 94, left hemisphere 6.2
2393 Male, age 80, right hemisphere 4.9
2569 Male, age 61, both hemispheres 3.8
Nucleus of the diagonal band
nTPM: 12.9
2029 Male, age 61, right hemisphere 16.5
2195 Female, age 85, both hemispheres 14.7
2775 Male, age 80, right hemisphere 13.7
1812 Female, age 91, both hemispheres 13.2
1979 Male, age 74, unknown 6.2
Olfactory tubercle
nTPM: 14.8
2487 Female, age 94, left hemisphere 18.9
1998 Female, age 91, both hemispheres 16.0
2856 Male, age 75, right hemisphere 15.4
1846 Male, age 80, right hemisphere 8.9
Putamen
nTPM: 10.8
1829 Male, age 74, unknown 15.2
2647 Male, age 75, left hemisphere 14.7
2466 Female, age 79, unknown 12.1
2489 Female, age 72, unknown 11.3
1937 Female, age 91, right hemisphere 10.1
1838 Male, age 80, right hemisphere 9.4
2482 Female, age 94, left hemisphere 2.6
Septal nuclei
nTPM: 12.2
1960 Male, age 74, unknown 17.8
2059 Female, age 85, both hemispheres 14.5
2629 Female, age 94, right hemisphere 14.1
2031 Female, age 72, unknown 13.7
2394 Male, age 61, left hemisphere 9.9
2009 Female, age 91, both hemispheres 8.2
2199 Male, age 80, right hemisphere 6.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.4
Samples: 246

Max nTPM: 42.3
Min nTPM: 5.8
Std nTPM: 7.1
Median nTPM: 20.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 42.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 41.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 41.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 36.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 35.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 35.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 34.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 34.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 34.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 34.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 34.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.2
Samples: 246

Max nTPM: 34.3
Min nTPM: 3.6
Std nTPM: 5.9
Median nTPM: 20.3
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 34.3
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 32.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 32.6
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 32.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 31.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 31.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 31.0
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 30.9
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 30.4
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 29.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 29.4
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Brain - Putamen (basal ganglia)
Average nTPM: 20.3
Samples: 205

Max nTPM: 37.8
Min nTPM: 5.2
Std nTPM: 6.9
Median nTPM: 20.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 37.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 37.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 35.7
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 35.7
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 35.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 34.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 33.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 33.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 33.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 32.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 32.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.2
FF:10164-103B2 76 years, female 8.2
Globus pallidus
Scaled Tags Per Million: 4.5
FF:10161-103A8 76 years, female 5.0
FF:10175-103C4 60 years, female 3.9
Nucleus accumbens
Scaled Tags Per Million: 8.0
FF:10037-101F1 23-56 years, mixed 8.0
Putamen
Scaled Tags Per Million: 8.4
FF:10176-103C5 60 years, female 8.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.3
Pig sample Sample description nTPM
Caudate
nTPM: 12.3
Samples: 4

Max nTPM: 14.4
Min nTPM: 8.9
Sample A Female 8.9
Sample B Female 14.4
Sample C Male 13.9
Sample D Male 12.0
Putamen
nTPM: 11.2
Samples: 4

Max nTPM: 13.6
Min nTPM: 7.5
Sample A Female 7.5
Sample B Female 11.6
Sample C Male 12.0
Sample D Male 13.6
Septum
nTPM: 8.7
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.6
Sample A Female 9.1
Sample B Female 9.8
Sample C Male 7.6
Sample D Male 8.4
Ventral pallidum
nTPM: 10.8
Samples: 4

Max nTPM: 12.8
Min nTPM: 8.2
Sample A Female 8.2
Sample B Female 11.8
Sample C Male 12.8
Sample D Male 10.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 23.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.9
Samples: 4

Max nTPM: 24.9
Min nTPM: 20.6
Sample A Male 22.6
Sample B Male 24.9
Sample C Female 23.6
Sample D Female 20.6
Septum
nTPM: 16.1
Samples: 4

Max nTPM: 18.3
Min nTPM: 14.3
Sample A Male 18.3
Sample B Male 14.3
Sample C Female 16.2
Sample D Female 15.7
Ventral forebrain
nTPM: 23.7
Samples: 4

Max nTPM: 25.5
Min nTPM: 21.8
Sample A Male 24.2
Sample B Male 21.8
Sample C Female 23.4
Sample D Female 25.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.2
68845203 Antisense, RP_050224_01_C09, Mouse strain C57BL/6J (56 days, male) 2.2
Pallidum
Expression energy: 1.2
68845203 Antisense, RP_050224_01_C09, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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