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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:176.0 nTPM
HPA:176.0 nTPM
GTEx:269.9 nTPM
FANTOM5:255.2 Scaled Tags Per Million
Mouse:94.8 nTPM
Allen mouse:3.2 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 176.0
Sample id Sample description nTPM
Amygdala
nTPM: 166.5
2514 Male, age 75, right hemisphere 172.8
2695 Female, age 67, right hemisphere 170.9
2814 Male, age 76, right hemisphere 168.0
1987 Female, age 91, left hemisphere 165.3
2517 Female, age 94, left hemisphere 155.6
Basal amygdala
nTPM: 164.8
2609 Male, age 75, right hemisphere 180.4
2827 Female, age 67, right hemisphere 172.1
2685 Female, age 94, left hemisphere 161.4
2243 Female, age 91, right hemisphere 160.2
1955 Male, age 76, both hemispheres 158.1
2110 Male, age 80, left hemisphere 156.5
Central amygdala
nTPM: 176.0
2826 Female, age 94, left hemisphere 186.8
2701 Female, age 91, right hemisphere 179.3
2515 Male, age 75, right hemisphere 179.2
2239 Male, age 80, left hemisphere 169.6
1905 Male, age 76, both hemispheres 165.1
Corticomedial amygdala
nTPM: 162.0
2428 Male, age 75, right hemisphere 181.2
2829 Male, age 80, left hemisphere 173.8
2535 Female, age 67, right hemisphere 161.4
2242 Female, age 91, right hemisphere 156.2
2429 Female, age 94, left hemisphere 154.1
2240 Male, age 76, both hemispheres 145.1
Lateral amygdala
nTPM: 170.8
2516 Male, age 75, right hemisphere 182.4
2255 Female, age 91, right hemisphere 178.0
2830 Female, age 67, right hemisphere 172.7
2534 Female, age 94, left hemisphere 170.2
2256 Male, age 80, left hemisphere 162.5
1883 Male, age 76, both hemispheres 159.1
Stria terminalis, bed nucleus
nTPM: 157.8
2201 Male, age 74, unknown 166.7
1974 Female, age 91, both hemispheres 157.9
2486 Female, age 94, both hemispheres 148.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 269.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 269.9
Samples: 152

Max nTPM: 503.8
Min nTPM: 63.9
Std nTPM: 83.6
Median nTPM: 266.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 503.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 483.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 435.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 431.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 430.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 429.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 415.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 411.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 410.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 400.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 399.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 399.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 394.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 392.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 378.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 377.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 377.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 370.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 362.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 358.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 358.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 357.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 354.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 352.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 350.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 349.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 344.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 338.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 337.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 334.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 333.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 331.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 328.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 328.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 326.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 325.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 323.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 321.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 321.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 320.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 318.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 318.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 316.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 313.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 311.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 310.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 309.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 307.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 305.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 303.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 301.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 300.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 299.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 298.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 296.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 294.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 293.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 292.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 291.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 285.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 284.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 283.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 282.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 281.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 280.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 280.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 278.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 277.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 275.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 274.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 272.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 270.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 269.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 268.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 268.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 267.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 265.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 265.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 262.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 262.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 261.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 261.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 260.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 260.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 260.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 259.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 257.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 257.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 254.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 252.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 251.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 250.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 250.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 250.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 250.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 249.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 248.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 248.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 248.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 243.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 242.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 242.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 239.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 239.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 234.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 233.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 232.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 229.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 227.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 227.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 225.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 225.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 224.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 221.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 219.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 219.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 219.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 218.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 216.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 215.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 215.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 214.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 214.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 213.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 212.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 197.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 195.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 195.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 195.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 193.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 191.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 187.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 179.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 176.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 173.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 169.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 167.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 165.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 159.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 128.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 128.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 128.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 126.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 113.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 107.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 105.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 101.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 89.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 86.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 82.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 81.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 63.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 255.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 255.2
FF:10151-102I7 76 years, female 255.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 94.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 94.8
Samples: 4

Max nTPM: 111.4
Min nTPM: 80.5
Sample A Male 111.4
Sample B Male 99.9
Sample C Female 87.4
Sample D Female 80.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.2
69548958 Antisense, RP_050426_02_F05, Mouse strain C57BL/6J (56 days, male) 3.2

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