MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:166.0 nTPM
HPA:166.0 nTPM
GTEx:246.3 nTPM
FANTOM5:266.3 Scaled Tags Per Million
Mouse:77.8 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 166.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 165.0
2586 Male, age 75, left hemisphere 175.3
1827 Male, age 72, unknown 174.2
1870 Female, age 42, unknown 169.9
2828 Female, age 72, unknown 166.6
2411 Female, age 72, unknown 166.5
2219 Male, age 76, both hemispheres 164.9
1833 Male, age 53, unknown 162.4
1830 Male, age 51, unknown 159.9
2019 Male, age 18, unknown 157.5
2666 Male, age 74, left hemisphere 153.1
Dorsal raphe nucleus
nTPM: 157.0
2750 Male, age 76, both hemispheres 162.2
2016 Female, age 72, unknown 158.9
2298 Female, age 72, unknown 156.4
2047 Male, age 72, unknown 154.6
1828 Male, age 53, unknown 152.8
Inferior colliculus
nTPM: 163.2
1890 Male, age 53, unknown 166.0
2849 Male, age 72, unknown 165.3
2097 Female, age 72, unknown 162.8
1848 Female, age 42, unknown 158.7
Median raphe nucleus
nTPM: 160.3
2220 Male, age 76, midline 160.3
Pedunculopontine tegmental nucleus
nTPM: 157.3
1921 Female, age 85, both hemispheres 164.0
2334 Male, age 80, both hemispheres 155.6
2338 Male, age 61, both hemispheres 152.3
Periaquaductal grey, anterior
nTPM: 164.9
2502 Female, age 75, unknown 172.1
1795 Male, age 51, unknown 161.6
1947 Male, age 18, unknown 161.0
Periaquaductal grey, dorsal
nTPM: 163.6
1840 Male, age 53, unknown 172.9
1831 Male, age 72, unknown 163.3
2464 Female, age 72, unknown 159.7
2850 Male, age 76, both hemispheres 158.4
Periaquaductal grey, lateral
nTPM: 165.5
2053 Male, age 18, unknown 172.7
2272 Male, age 74, both hemispheres 163.5
2140 Male, age 76, both hemispheres 160.3
Pretectal area
nTPM: 164.6
2667 Female, age 75, unknown 174.0
2825 Male, age 18, unknown 173.2
1815 Male, age 53, unknown 167.3
2273 Male, age 74, both hemispheres 166.5
2407 Male, age 75, both hemispheres 164.3
1817 Female, age 42, unknown 163.9
2007 Male, age 72, unknown 163.0
2316 Male, age 76, right hemisphere 162.8
2224 Female, age 72, unknown 160.8
1816 Male, age 51, unknown 160.2
1944 Female, age 72, unknown 154.6
Red nucleus
nTPM: 166.0
2503 Female, age 72, unknown 180.8
2584 Male, age 75, left hemisphere 179.4
2588 Male, age 74, left hemisphere 177.7
1865 Male, age 51, unknown 167.9
1904 Male, age 53, unknown 164.4
2227 Male, age 72, unknown 163.4
2769 Male, age 72, unknown 162.8
1821 Female, age 72, unknown 162.3
2823 Male, age 76, right hemisphere 161.9
2725 Female, age 75, unknown 160.2
1954 Female, age 42, unknown 155.6
2785 Male, age 18, unknown 155.6
Substantia nigra
nTPM: 160.3
2590 Female, age 75, unknown 170.7
2583 Male, age 75, right hemisphere 167.5
1851 Male, age 51, unknown 167.2
2665 Male, age 74, both hemispheres 163.1
2699 Male, age 18, unknown 161.8
2409 Female, age 72, unknown 160.1
1916 Female, age 42, unknown 158.3
1889 Female, age 72, unknown 156.3
2241 Male, age 72, unknown 152.1
1941 Male, age 53, unknown 146.1
Superior colliculus
nTPM: 165.3
2664 Male, age 75, both hemispheres 186.8
1995 Male, age 72, unknown 171.8
2261 Male, age 18, unknown 169.6
1895 Male, age 76, right hemisphere 168.6
1913 Female, age 42, unknown 168.5
1796 Male, age 53, unknown 167.8
1839 Male, age 51, unknown 160.2
2087 Female, age 72, unknown 157.6
2587 Male, age 74, left hemisphere 156.2
2668 Female, age 75, unknown 145.7
Ventral tegmental area
nTPM: 160.1
1942 Male, age 51, unknown 167.6
2021 Male, age 53, unknown 166.1
1915 Female, age 42, unknown 161.5
2223 Female, age 72, unknown 158.0
2410 Female, age 72, unknown 155.1
2218 Male, age 76, both hemispheres 152.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 246.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 246.3
Samples: 139

Max nTPM: 544.1
Min nTPM: 78.7
Std nTPM: 82.5
Median nTPM: 245.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 544.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 529.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 457.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 430.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 427.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 404.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 384.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 362.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 362.6
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 357.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 357.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 266.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 266.3
FF:10158-103A5 76 years, female 266.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 77.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.8
Samples: 4

Max nTPM: 103.4
Min nTPM: 63.4
Sample A Male 103.4
Sample B Male 76.8
Sample C Female 63.4
Sample D Female 67.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
69548958 Antisense, RP_050426_02_F05, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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