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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:180.1 nTPM
HPA:180.1 nTPM
GTEx:174.0 nTPM
FANTOM5:303.5 Scaled Tags Per Million
Pig:109.3 nTPM
Mouse:547.8 nTPM
Allen mouse:24.0 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA029780Antibody HPA056488
Glial cells Not detectedMedium
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 180.1
Sample id Sample description nTPM
Hippocampus
nTPM: 179.3
2529 Female, age 94, left hemisphere 189.1
2621 Female, age 67, right hemisphere 184.9
1898 Male, age 80, left hemisphere 183.2
2148 Female, age 91, left hemisphere 177.4
1911 Female, age 85, right hemisphere 177.2
1855 Male, age 76, left hemisphere 164.2
Dentate gyrus
nTPM: 175.3
2530 Female, age 94, left hemisphere 187.1
2528 Male, age 74, both hemispheres 180.9
2010 Male, age 76, both hemispheres 176.1
2246 Female, age 85, both hemispheres 174.4
1927 Female, age 91, both hemispheres 168.7
2531 Female, age 67, both hemispheres 164.5
Entorhinal gyrus
nTPM: 174.8
2117 Female, age 91, right hemisphere 197.2
2764 Male, age 80, right hemisphere 181.3
1938 Female, age 85, left hemisphere 179.3
1787 Male, age 76, left hemisphere 168.2
2613 Female, age 94, left hemisphere 164.4
2686 Male, age 75, right hemisphere 158.4
Hippocampus, CA1
nTPM: 178.2
2527 Male, age 74, both hemispheres 199.8
2749 Male, age 80, left hemisphere 182.2
1873 Female, age 85, both hemispheres 173.6
2082 Female, age 91, right hemisphere 171.8
2045 Male, age 76, both hemispheres 163.6
Hippocampus, CA2
nTPM: 180.1
2249 Male, age 74, both hemispheres 207.4
1963 Male, age 80, left hemisphere 178.8
2437 Female, age 94, left hemisphere 176.9
2113 Female, age 91, right hemisphere 173.8
1892 Male, age 76, both hemispheres 172.0
1940 Female, age 85, left hemisphere 171.7
Hippocampus, CA3
nTPM: 177.5
2436 Male, age 74, both hemispheres 202.3
1891 Female, age 85, both hemispheres 183.3
2620 Female, age 94, left hemisphere 172.4
2137 Male, age 80, left hemisphere 170.3
1867 Male, age 76, both hemispheres 169.6
2861 Female, age 67, both hemispheres 167.1
Parahippocampal cortex
nTPM: 176.0
2250 Female, age 67, right hemisphere 187.8
2245 Female, age 91, both hemispheres 179.4
1990 Female, age 91, right hemisphere 178.0
2622 Female, age 67, right hemisphere 177.3
2532 Female, age 72, left hemisphere 176.1
1933 Female, age 85, both hemispheres 175.9
2692 Male, age 74, both hemispheres 175.8
1850 Male, age 80, both hemispheres 173.4
2018 Male, age 76, both hemispheres 168.8
2693 Female, age 94, both hemispheres 167.4
Perirhinal gyrus
nTPM: 175.4
1841 Female, age 85, right hemisphere 179.5
1847 Female, age 91, left hemisphere 178.7
1794 Male, age 80, right hemisphere 178.0
2521 Female, age 94, right hemisphere 174.3
2848 Male, age 76, right hemisphere 166.6
Subiculum
nTPM: 177.7
2619 Male, age 74, both hemispheres 188.7
2042 Male, age 76, both hemispheres 183.2
1977 Female, age 85, both hemispheres 180.8
1901 Male, age 80, both hemispheres 177.4
2438 Female, age 94, left hemisphere 168.3
2729 Female, age 91, right hemisphere 168.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 174.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 174.0
Samples: 197

Max nTPM: 283.1
Min nTPM: 51.4
Std nTPM: 39.0
Median nTPM: 167.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 283.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 279.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 269.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 265.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 263.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 256.6
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 254.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 254.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 254.4
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 247.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 246.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 244.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 243.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 237.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 237.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 236.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 236.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 236.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 236.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 230.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 229.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 222.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 221.2
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 217.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 217.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 216.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 214.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 213.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 213.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 212.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 211.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 211.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 210.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 210.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 210.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 209.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 209.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 208.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 207.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 207.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 206.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 206.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 204.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 203.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 203.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 202.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 201.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 201.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 200.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 200.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 200.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 199.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 198.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 198.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 197.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 197.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 196.0
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 195.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 195.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 193.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 192.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 192.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 191.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 190.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 189.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 189.0
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 188.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 187.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 187.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 185.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 185.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 185.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 185.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 183.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 183.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 183.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 183.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 182.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 182.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 182.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 180.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 179.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 177.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 177.2
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 177.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 175.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 174.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 173.8
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 173.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 173.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 173.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 172.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 171.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 170.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 169.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 168.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 167.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 167.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 167.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 166.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 166.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 166.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 165.7
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 165.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 164.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 163.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 163.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 162.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 162.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 161.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 161.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 161.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 160.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 160.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 159.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 158.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 158.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 158.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 157.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 157.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 156.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 156.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 156.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 155.3
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 155.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 154.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 154.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 153.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 153.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 153.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 152.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 152.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 152.1
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 152.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 152.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 151.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 150.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 149.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 149.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 148.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 148.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 147.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 147.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 147.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 147.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 147.0
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 147.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 146.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 146.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 145.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 145.2
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 144.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 144.3
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 143.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 143.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 143.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 140.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 140.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 138.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 137.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 137.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 137.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 137.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 137.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 136.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 136.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 136.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 136.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 135.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 134.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 132.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 132.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 132.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 130.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 130.9
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 130.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 130.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 130.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 130.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 129.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 129.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 128.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 126.6
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 124.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 124.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 121.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 119.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 119.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 119.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 116.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 116.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 115.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 113.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 112.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 103.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 100.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 51.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 303.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 303.5
FF:10153-102I9 76 years, female 346.6
FF:10169-103B7 60 years, female 260.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 109.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 103.7
Samples: 4

Max nTPM: 126.9
Min nTPM: 79.5
Sample A Female 126.9
Sample B Female 88.5
Sample C Male 119.7
Sample D Male 79.5
Entorhinal cortex
nTPM: 109.3
Samples: 4

Max nTPM: 115.8
Min nTPM: 106.1
Sample A Female 115.8
Sample B Female 108.2
Sample C Male 107.2
Sample D Male 106.1
Subiculum
nTPM: 91.2
Samples: 4

Max nTPM: 121.3
Min nTPM: 77.6
Sample A Female 121.3
Sample B Female 80.2
Sample C Male 77.6
Sample D Male 85.7
Ventral hippocampus
nTPM: 92.5
Samples: 4

Max nTPM: 117.5
Min nTPM: 60.9
Sample A Female 90.3
Sample B Female 60.9
Sample C Male 117.5
Sample D Male 101.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 547.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 545.8
Samples: 4

Max nTPM: 570.4
Min nTPM: 516.2
Sample A Male 542.2
Sample B Male 516.2
Sample C Female 554.5
Sample D Female 570.4
Hippocampal formation
nTPM: 547.8
Samples: 4

Max nTPM: 573.3
Min nTPM: 497.0
Sample A Male 554.9
Sample B Male 497.0
Sample C Female 573.3
Sample D Female 566.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 24.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 24.0
544902 Antisense, RP_040420_01_H11, Mouse strain C57BL/6J (56 days, male) 25.1
75694901 Antisense, RP_060518_04_A09, Mouse strain C57BL/6J (56 days, male) 23.0

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