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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:207.6 nTPM
HPA:207.6 nTPM
GTEx:221.4 nTPM
FANTOM5:259.6 Scaled Tags Per Million
Pig:316.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 207.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 196.3
1981 Female, age 72, midline 213.6
2565 Male, age 75, midline 201.5
2194 Female, age 79, both hemispheres 193.9
2816 Male, age 47, midline 190.4
2048 Male, age 55, midline 181.9
Cervical spinal cord, dorsal horn
nTPM: 207.6
2296 Male, age 66, both hemispheres 240.5
2173 Female, age 72, unknown 228.8
2069 Male, age 47, both hemispheres 204.7
1877 Male, age 55, unknown 193.7
2297 Male, age 75, both hemispheres 189.6
2721 Male, age 90, both hemispheres 188.2
Cervical spinal cord, ventral horn
nTPM: 195.3
2098 Female, age 72, unknown 209.3
2068 Male, age 55, unknown 200.2
2820 Female, age 79, both hemispheres 199.5
2295 Male, age 66, both hemispheres 189.7
2480 Male, age 75, both hemispheres 187.1
2809 Male, age 90, both hemispheres 186.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 221.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 221.4
Samples: 159

Max nTPM: 365.3
Min nTPM: 105.2
Std nTPM: 47.1
Median nTPM: 219.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 365.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 352.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 337.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 333.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 314.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 304.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 303.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 303.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 302.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 301.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 300.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 300.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 291.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 282.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 281.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 278.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 276.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 276.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 276.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 275.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 274.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 271.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 269.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 268.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 265.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 265.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 263.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 262.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 262.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 262.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 261.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 260.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 260.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 256.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 256.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 256.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 255.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 253.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 253.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 252.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 252.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 252.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 248.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 247.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 245.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 244.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 244.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 243.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 241.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 241.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 240.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 239.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 238.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 237.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 237.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 236.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 236.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 234.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 233.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 233.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 233.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 232.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 232.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 232.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 232.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 231.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 230.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 229.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 229.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 229.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 228.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 228.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 228.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 224.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 224.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 222.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 222.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 221.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 220.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 219.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 219.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 219.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 218.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 216.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 215.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 215.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 214.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 214.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 213.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 212.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 212.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 211.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 210.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 209.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 209.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 208.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 208.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 208.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 207.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 206.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 206.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 206.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 205.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 205.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 204.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 202.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 202.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 200.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 199.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 199.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 198.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 198.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 197.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 196.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 195.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 192.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 191.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 187.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 186.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 186.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 183.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 182.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 181.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 180.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 180.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 179.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 176.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 176.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 174.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 174.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 172.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 172.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 171.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 171.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 170.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 170.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 169.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 169.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 167.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 166.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 166.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 165.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 165.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 164.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 164.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 162.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 159.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 157.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 154.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 153.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 151.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 150.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 143.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 138.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 137.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 131.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 129.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 120.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 105.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 259.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 259.6
FF:10159-103A6 76 years, female 267.9
FF:10181-103D1 60 years, female 251.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 316.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 234.4
Samples: 4

Max nTPM: 261.5
Min nTPM: 221.3
Sample A Female 230.5
Sample B Female 224.1
Sample C Male 221.3
Sample D Male 261.5
Ventral spinal cord
nTPM: 316.2
Samples: 4

Max nTPM: 335.1
Min nTPM: 281.9
Sample A Female 319.4
Sample B Female 281.9
Sample C Male 328.4
Sample D Male 335.1

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