MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:55.8 nTPM
HPA:55.8 nTPM
GTEx:71.7 nTPM
FANTOM5:54.5 Scaled Tags Per Million
Mouse:52.2 nTPM
Allen mouse:18.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.9
2586 Male, age 75, left hemisphere 60.9
2411 Female, age 72, unknown 54.4
2219 Male, age 76, both hemispheres 53.4
1827 Male, age 72, unknown 53.1
2019 Male, age 18, unknown 52.9
1870 Female, age 42, unknown 51.4
2828 Female, age 72, unknown 51.4
2666 Male, age 74, left hemisphere 51.3
1833 Male, age 53, unknown 50.9
1830 Male, age 51, unknown 49.9
Dorsal raphe nucleus
nTPM: 52.7
2298 Female, age 72, unknown 55.1
2047 Male, age 72, unknown 54.3
2750 Male, age 76, both hemispheres 52.2
1828 Male, age 53, unknown 51.9
2016 Female, age 72, unknown 49.9
Inferior colliculus
nTPM: 50.0
2097 Female, age 72, unknown 51.4
1890 Male, age 53, unknown 51.2
1848 Female, age 42, unknown 49.3
2849 Male, age 72, unknown 48.1
Median raphe nucleus
nTPM: 52.1
2220 Male, age 76, midline 52.1
Pedunculopontine tegmental nucleus
nTPM: 51.3
2334 Male, age 80, both hemispheres 53.5
1921 Female, age 85, both hemispheres 51.5
2338 Male, age 61, both hemispheres 48.8
Periaquaductal grey, anterior
nTPM: 55.0
2502 Female, age 75, unknown 55.8
1947 Male, age 18, unknown 55.2
1795 Male, age 51, unknown 54.1
Periaquaductal grey, dorsal
nTPM: 48.9
2464 Female, age 72, unknown 50.0
1831 Male, age 72, unknown 49.4
1840 Male, age 53, unknown 49.1
2850 Male, age 76, both hemispheres 47.3
Periaquaductal grey, lateral
nTPM: 47.7
2053 Male, age 18, unknown 48.4
2272 Male, age 74, both hemispheres 47.8
2140 Male, age 76, both hemispheres 46.7
Pretectal area
nTPM: 52.4
1816 Male, age 51, unknown 57.2
2007 Male, age 72, unknown 57.2
1817 Female, age 42, unknown 55.4
1944 Female, age 72, unknown 54.2
1815 Male, age 53, unknown 53.4
2667 Female, age 75, unknown 51.5
2825 Male, age 18, unknown 50.9
2224 Female, age 72, unknown 50.3
2316 Male, age 76, right hemisphere 49.8
2273 Male, age 74, both hemispheres 48.3
2407 Male, age 75, both hemispheres 48.1
Red nucleus
nTPM: 52.4
1821 Female, age 72, unknown 54.7
2769 Male, age 72, unknown 53.5
1904 Male, age 53, unknown 53.4
1865 Male, age 51, unknown 53.3
2584 Male, age 75, left hemisphere 53.1
2227 Male, age 72, unknown 52.8
2503 Female, age 72, unknown 52.7
2785 Male, age 18, unknown 52.1
2588 Male, age 74, left hemisphere 51.8
1954 Female, age 42, unknown 51.2
2725 Female, age 75, unknown 51.1
2823 Male, age 76, right hemisphere 48.8
Substantia nigra
nTPM: 55.8
1916 Female, age 42, unknown 65.6
1851 Male, age 51, unknown 61.2
2665 Male, age 74, both hemispheres 57.8
2409 Female, age 72, unknown 55.2
2699 Male, age 18, unknown 54.9
2583 Male, age 75, right hemisphere 54.5
1941 Male, age 53, unknown 53.7
1889 Female, age 72, unknown 53.6
2590 Female, age 75, unknown 52.6
2241 Male, age 72, unknown 49.2
Superior colliculus
nTPM: 52.1
2668 Female, age 75, unknown 56.1
1796 Male, age 53, unknown 54.3
2664 Male, age 75, both hemispheres 53.5
2087 Female, age 72, unknown 53.2
2261 Male, age 18, unknown 52.8
1995 Male, age 72, unknown 51.9
1895 Male, age 76, right hemisphere 51.6
1913 Female, age 42, unknown 50.3
2587 Male, age 74, left hemisphere 48.8
1839 Male, age 51, unknown 48.3
Ventral tegmental area
nTPM: 53.4
1915 Female, age 42, unknown 57.6
2410 Female, age 72, unknown 55.0
2218 Male, age 76, both hemispheres 54.2
2021 Male, age 53, unknown 51.4
1942 Male, age 51, unknown 51.3
2223 Female, age 72, unknown 51.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.7
Samples: 139

Max nTPM: 148.5
Min nTPM: 25.2
Std nTPM: 18.9
Median nTPM: 69.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 148.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 128.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 121.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 113.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 111.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 110.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 105.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 104.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 98.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 97.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 96.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.5
FF:10158-103A5 76 years, female 54.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 52.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.3
Samples: 4

Max nTPM: 62.5
Min nTPM: 45.4
Sample A Male 62.5
Sample B Male 45.4
Sample C Female 46.5
Sample D Female 54.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 18.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.8
512769 Antisense, RP_040809_02_D07, Mouse strain C57BL/6J (56 days, male) 18.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.