MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.4 nTPM
HPA:40.4 nTPM
GTEx:32.0 nTPM
FANTOM5:65.8 Scaled Tags Per Million
Pig:25.9 nTPM
Mouse:27.9 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.5
2411 Female, age 72, unknown 43.9
2828 Female, age 72, unknown 42.2
1870 Female, age 42, unknown 41.9
1830 Male, age 51, unknown 41.3
1833 Male, age 53, unknown 40.5
2586 Male, age 75, left hemisphere 38.8
1827 Male, age 72, unknown 37.4
2019 Male, age 18, unknown 34.1
2219 Male, age 76, both hemispheres 33.0
2666 Male, age 74, left hemisphere 31.5
Dorsal raphe nucleus
nTPM: 38.7
2750 Male, age 76, both hemispheres 43.8
2298 Female, age 72, unknown 40.0
2047 Male, age 72, unknown 38.0
2016 Female, age 72, unknown 37.6
1828 Male, age 53, unknown 33.8
Inferior colliculus
nTPM: 36.3
2849 Male, age 72, unknown 39.4
1848 Female, age 42, unknown 38.2
2097 Female, age 72, unknown 34.5
1890 Male, age 53, unknown 33.1
Median raphe nucleus
nTPM: 34.3
2220 Male, age 76, midline 34.3
Pedunculopontine tegmental nucleus
nTPM: 37.7
2338 Male, age 61, both hemispheres 38.5
1921 Female, age 85, both hemispheres 37.9
2334 Male, age 80, both hemispheres 36.9
Periaquaductal grey, anterior
nTPM: 39.0
2502 Female, age 75, unknown 40.7
1947 Male, age 18, unknown 39.4
1795 Male, age 51, unknown 36.8
Periaquaductal grey, dorsal
nTPM: 34.3
2464 Female, age 72, unknown 38.6
1840 Male, age 53, unknown 33.8
2850 Male, age 76, both hemispheres 32.6
1831 Male, age 72, unknown 32.2
Periaquaductal grey, lateral
nTPM: 38.1
2272 Male, age 74, both hemispheres 40.9
2053 Male, age 18, unknown 37.9
2140 Male, age 76, both hemispheres 35.6
Pretectal area
nTPM: 35.4
2667 Female, age 75, unknown 43.1
2825 Male, age 18, unknown 39.7
2273 Male, age 74, both hemispheres 39.0
2316 Male, age 76, right hemisphere 38.8
2224 Female, age 72, unknown 37.6
2407 Male, age 75, both hemispheres 36.3
1815 Male, age 53, unknown 33.9
1817 Female, age 42, unknown 32.2
2007 Male, age 72, unknown 30.5
1944 Female, age 72, unknown 29.2
1816 Male, age 51, unknown 29.0
Red nucleus
nTPM: 40.4
2769 Male, age 72, unknown 45.0
2227 Male, age 72, unknown 44.9
1865 Male, age 51, unknown 42.2
1904 Male, age 53, unknown 42.2
2785 Male, age 18, unknown 41.8
2503 Female, age 72, unknown 41.4
1821 Female, age 72, unknown 41.1
2823 Male, age 76, right hemisphere 40.6
1954 Female, age 42, unknown 40.1
2584 Male, age 75, left hemisphere 37.2
2588 Male, age 74, left hemisphere 34.8
2725 Female, age 75, unknown 33.4
Substantia nigra
nTPM: 34.8
2665 Male, age 74, both hemispheres 37.5
1851 Male, age 51, unknown 37.1
2590 Female, age 75, unknown 37.0
2583 Male, age 75, right hemisphere 36.2
2699 Male, age 18, unknown 36.2
1941 Male, age 53, unknown 35.4
1916 Female, age 42, unknown 34.1
2409 Female, age 72, unknown 32.9
1889 Female, age 72, unknown 32.7
2241 Male, age 72, unknown 29.0
Superior colliculus
nTPM: 36.3
1995 Male, age 72, unknown 41.4
1913 Female, age 42, unknown 40.5
1796 Male, age 53, unknown 40.2
1839 Male, age 51, unknown 38.9
2587 Male, age 74, left hemisphere 37.2
1895 Male, age 76, right hemisphere 34.2
2664 Male, age 75, both hemispheres 33.4
2087 Female, age 72, unknown 33.0
2261 Male, age 18, unknown 32.5
2668 Female, age 75, unknown 31.8
Ventral tegmental area
nTPM: 38.5
2223 Female, age 72, unknown 41.7
2410 Female, age 72, unknown 39.7
2021 Male, age 53, unknown 39.6
1942 Male, age 51, unknown 38.1
1915 Female, age 42, unknown 36.0
2218 Male, age 76, both hemispheres 35.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.0
Samples: 139

Max nTPM: 154.0
Min nTPM: 13.1
Std nTPM: 15.1
Median nTPM: 29.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 154.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 84.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 77.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 69.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 67.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 59.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 58.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 54.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 50.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 50.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 47.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.8
FF:10158-103A5 76 years, female 65.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.9
Pig sample Sample description nTPM
Midbrain
nTPM: 25.6
Samples: 4

Max nTPM: 38.8
Min nTPM: 19.8
Sample A Female 38.8
Sample B Female 22.6
Sample C Male 21.1
Sample D Male 19.8
Periaqueductal gray
nTPM: 19.0
Samples: 3

Max nTPM: 20.4
Min nTPM: 17.3
Sample B Female 20.4
Sample C Male 19.3
Sample D Male 17.3
Substantia nigra
nTPM: 25.9
Samples: 4

Max nTPM: 30.9
Min nTPM: 22.9
Sample A Female 26.1
Sample B Female 23.7
Sample C Male 22.9
Sample D Male 30.9
Superior colliculi
nTPM: 25.3
Samples: 4

Max nTPM: 28.6
Min nTPM: 23.0
Sample A Female 25.3
Sample B Female 28.6
Sample C Male 23.0
Sample D Male 24.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 31.4
Min nTPM: 26.3
Sample A Male 31.4
Sample B Male 26.3
Sample C Female 27.1
Sample D Female 27.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69014728 Antisense, RP_050310_01_F02, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.