MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:174.2 nTPM
HPA:174.2 nTPM
GTEx:158.8 nTPM
FANTOM5:164.5 Scaled Tags Per Million
Pig:90.7 nTPM
Mouse:45.5 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 174.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 143.9
1870 Female, age 42, unknown 152.7
2586 Male, age 75, left hemisphere 152.0
2828 Female, age 72, unknown 148.8
2666 Male, age 74, left hemisphere 148.6
1830 Male, age 51, unknown 144.7
2411 Female, age 72, unknown 143.1
1833 Male, age 53, unknown 141.5
2219 Male, age 76, both hemispheres 141.3
2019 Male, age 18, unknown 141.1
1827 Male, age 72, unknown 125.3
Dorsal raphe nucleus
nTPM: 155.8
2047 Male, age 72, unknown 171.3
1828 Male, age 53, unknown 165.0
2750 Male, age 76, both hemispheres 163.8
2016 Female, age 72, unknown 140.7
2298 Female, age 72, unknown 138.3
Inferior colliculus
nTPM: 131.7
2849 Male, age 72, unknown 139.0
1890 Male, age 53, unknown 136.3
1848 Female, age 42, unknown 136.2
2097 Female, age 72, unknown 115.4
Median raphe nucleus
nTPM: 174.2
2220 Male, age 76, midline 174.2
Pedunculopontine tegmental nucleus
nTPM: 147.8
2338 Male, age 61, both hemispheres 161.6
2334 Male, age 80, both hemispheres 154.5
1921 Female, age 85, both hemispheres 127.4
Periaquaductal grey, anterior
nTPM: 136.2
1795 Male, age 51, unknown 137.3
1947 Male, age 18, unknown 137.2
2502 Female, age 75, unknown 134.3
Periaquaductal grey, dorsal
nTPM: 137.5
2850 Male, age 76, both hemispheres 159.5
1831 Male, age 72, unknown 130.9
1840 Male, age 53, unknown 130.5
2464 Female, age 72, unknown 129.1
Periaquaductal grey, lateral
nTPM: 132.3
2140 Male, age 76, both hemispheres 135.3
2272 Male, age 74, both hemispheres 135.1
2053 Male, age 18, unknown 126.6
Pretectal area
nTPM: 131.2
2667 Female, age 75, unknown 141.6
2825 Male, age 18, unknown 141.3
1817 Female, age 42, unknown 141.2
2224 Female, age 72, unknown 132.0
2407 Male, age 75, both hemispheres 131.1
2273 Male, age 74, both hemispheres 129.5
1815 Male, age 53, unknown 127.9
1944 Female, age 72, unknown 127.8
2007 Male, age 72, unknown 127.4
2316 Male, age 76, right hemisphere 121.7
1816 Male, age 51, unknown 121.6
Red nucleus
nTPM: 149.5
1865 Male, age 51, unknown 158.9
2769 Male, age 72, unknown 154.9
2227 Male, age 72, unknown 153.7
1954 Female, age 42, unknown 153.2
1821 Female, age 72, unknown 151.9
2823 Male, age 76, right hemisphere 150.9
1904 Male, age 53, unknown 149.6
2588 Male, age 74, left hemisphere 148.4
2584 Male, age 75, left hemisphere 145.8
2503 Female, age 72, unknown 144.0
2785 Male, age 18, unknown 141.5
2725 Female, age 75, unknown 140.7
Substantia nigra
nTPM: 154.3
2699 Male, age 18, unknown 178.0
1916 Female, age 42, unknown 167.5
1851 Male, age 51, unknown 166.0
2665 Male, age 74, both hemispheres 164.5
1941 Male, age 53, unknown 159.6
2583 Male, age 75, right hemisphere 145.6
2241 Male, age 72, unknown 143.7
2590 Female, age 75, unknown 143.2
1889 Female, age 72, unknown 138.8
2409 Female, age 72, unknown 135.6
Superior colliculus
nTPM: 133.5
2664 Male, age 75, both hemispheres 143.2
1995 Male, age 72, unknown 141.3
2668 Female, age 75, unknown 140.7
2587 Male, age 74, left hemisphere 138.6
1913 Female, age 42, unknown 138.4
1839 Male, age 51, unknown 131.3
2087 Female, age 72, unknown 130.0
1796 Male, age 53, unknown 129.5
1895 Male, age 76, right hemisphere 121.0
2261 Male, age 18, unknown 120.8
Ventral tegmental area
nTPM: 161.1
2223 Female, age 72, unknown 182.3
2218 Male, age 76, both hemispheres 163.3
1915 Female, age 42, unknown 160.7
2021 Male, age 53, unknown 156.4
2410 Female, age 72, unknown 152.2
1942 Male, age 51, unknown 151.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 158.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 158.8
Samples: 139

Max nTPM: 432.5
Min nTPM: 84.0
Std nTPM: 48.3
Median nTPM: 148.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 432.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 383.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 295.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 288.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 282.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 263.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 245.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 243.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 238.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 237.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 235.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 164.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 164.5
FF:10158-103A5 76 years, female 164.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 90.7
Pig sample Sample description nTPM
Midbrain
nTPM: 74.0
Samples: 4

Max nTPM: 132.0
Min nTPM: 41.9
Sample A Female 132.0
Sample B Female 70.4
Sample C Male 51.7
Sample D Male 41.9
Periaqueductal gray
nTPM: 60.4
Samples: 3

Max nTPM: 66.7
Min nTPM: 52.1
Sample B Female 62.5
Sample C Male 66.7
Sample D Male 52.1
Substantia nigra
nTPM: 90.7
Samples: 4

Max nTPM: 110.4
Min nTPM: 71.0
Sample A Female 110.4
Sample B Female 93.4
Sample C Male 87.9
Sample D Male 71.0
Superior colliculi
nTPM: 71.8
Samples: 4

Max nTPM: 92.5
Min nTPM: 53.6
Sample A Female 80.7
Sample B Female 92.5
Sample C Male 53.6
Sample D Male 60.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.5
Samples: 4

Max nTPM: 50.3
Min nTPM: 41.9
Sample A Male 50.3
Sample B Male 45.0
Sample C Female 41.9
Sample D Female 44.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
77620794 Antisense, RP_070129_03_G08, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.