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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:984.1 nTPM
HPA:984.1 nTPM
FANTOM5:130.8 Scaled Tags Per Million
Pig:228.7 nTPM
Mouse:1013.9 nTPM

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 984.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 945.3
2090 Male, age 80, both hemispheres 991.9
2188 Female, age 91, both hemispheres 949.3
1984 Male, age 76, both hemispheres 923.3
2301 Female, age 85, both hemispheres 916.5
Area postrema
nTPM: 973.5
2799 Male, age 61, both hemispheres 1053.4
2306 Male, age 80, both hemispheres 987.2
2054 Male, age 76, both hemispheres 879.9
Cuneate nuclei
nTPM: 917.8
2376 Male, age 61, both hemispheres 938.6
2381 Male, age 80, both hemispheres 923.1
2131 Male, age 76, both hemispheres 891.8
Dorsal cochlear nucleus
nTPM: 966.4
2802 Male, age 74, right hemisphere 1021.6
2378 Male, age 80, both hemispheres 966.0
2187 Female, age 91, both hemispheres 962.3
2058 Male, age 76, both hemispheres 947.1
2370 Male, age 61, both hemispheres 935.2
Dorsal medullary reticular nucleus
nTPM: 925.2
2373 Male, age 61, both hemispheres 946.0
2088 Male, age 76, both hemispheres 926.9
2040 Female, age 85, both hemispheres 902.7
Dorsal motor vagal complex
nTPM: 950.3
2797 Male, age 61, both hemispheres 1064.7
2643 Male, age 74, both hemispheres 997.2
2844 Male, age 55, unknown 941.2
2000 Male, age 74, unknown 939.7
2133 Female, age 91, both hemispheres 930.3
2807 Female, age 85, both hemispheres 928.1
2185 Male, age 76, both hemispheres 912.9
2813 Female, age 72, unknown 888.3
Dorsal tegmental nucleus
nTPM: 944.4
2083 Male, age 80, both hemispheres 978.1
2326 Male, age 74, both hemispheres 976.1
1936 Male, age 76, left hemisphere 915.1
2358 Male, age 61, both hemispheres 908.2
Dorsolateral tegmental area
nTPM: 940.7
2654 Male, age 80, both hemispheres 972.7
2337 Male, age 61, both hemispheres 969.1
2751 Female, age 85, both hemispheres 924.7
2360 Male, age 74, both hemispheres 918.7
2141 Male, age 76, both hemispheres 918.5
Gigantocellular reticular nuclei, medullary
nTPM: 930.5
2314 Male, age 61, both hemispheres 984.8
2310 Male, age 80, both hemispheres 926.3
2462 Male, age 74, both hemispheres 925.0
2387 Female, age 91, both hemispheres 924.3
2022 Male, age 76, right hemisphere 916.5
1876 Female, age 85, both hemispheres 906.3
Gigantocellular reticular nuclei, pars
nTPM: 915.5
2084 Female, age 85, both hemispheres 933.3
2168 Male, age 76, both hemispheres 928.2
2330 Male, age 80, both hemispheres 909.6
2706 Male, age 80, both hemispheres 906.4
2336 Male, age 61, both hemispheres 900.2
Inferior olive
nTPM: 975.5
2563 Male, age 74, both hemispheres 1003.2
2379 Male, age 80, both hemispheres 986.3
2085 Female, age 85, both hemispheres 972.4
2178 Male, age 61, both hemispheres 971.1
2628 Female, age 91, both hemispheres 944.6
Kolliker-Fuse nucleus
nTPM: 926.7
2315 Male, age 76, right hemisphere 949.8
2793 Female, age 91, left hemisphere 915.4
2163 Male, age 80, both hemispheres 914.8
Lateral lemniscal nuclei
nTPM: 903.2
2746 Female, age 85, left hemisphere 935.5
2169 Male, age 76, both hemispheres 926.6
2453 Male, age 74, right hemisphere 912.4
2320 Female, age 91, left hemisphere 896.2
2036 Male, age 80, both hemispheres 845.5
Lateral medullary reticular nucleus
nTPM: 947.7
2852 Male, age 80, both hemispheres 989.7
2804 Female, age 91, both hemispheres 966.2
2305 Male, age 74, both hemispheres 953.4
2190 Female, age 85, both hemispheres 942.2
2374 Male, age 61, both hemispheres 931.2
2044 Male, age 76, both hemispheres 903.3
Lateral parabrachial nucleus
nTPM: 941.9
2139 Female, age 85, right hemisphere 958.7
2013 Male, age 80, both hemispheres 957.5
2792 Male, age 76, both hemispheres 955.8
2790 Male, age 61, both hemispheres 895.6
Lateral vestibular nucleus
nTPM: 932.5
2311 Male, age 80, both hemispheres 962.3
2184 Male, age 76, both hemispheres 902.7
Locus coeruleus
nTPM: 897.2
2123 Female, age 91, both hemispheres 918.1
2162 Male, age 80, both hemispheres 916.2
2317 Female, age 72, unknown 905.1
2720 Male, age 74, both hemispheres 898.5
1980 Male, age 76, both hemispheres 887.1
2014 Male, age 55, unknown 884.4
2788 Male, age 74, unknown 871.1
Medial olivary nucleus
nTPM: 977.1
1943 Male, age 61, both hemispheres 1010.0
2138 Female, age 91, both hemispheres 1002.9
1962 Male, age 76, both hemispheres 968.7
2851 Male, age 80, both hemispheres 926.9
Medial parabrachial nucleus
nTPM: 927.8
2170 Female, age 91, both hemispheres 971.7
2463 Female, age 85, right hemisphere 946.4
2854 Male, age 80, both hemispheres 914.8
2786 Male, age 76, both hemispheres 903.9
2156 Male, age 61, both hemispheres 902.1
Medial periolivary nuclei
nTPM: 933.9
2063 Male, age 76, both hemispheres 995.9
2081 Male, age 80, both hemispheres 962.0
2171 Female, age 85, both hemispheres 913.4
2458 Female, age 91, both hemispheres 908.2
2791 Male, age 74, right hemisphere 889.8
Medial vestibular nucleus
nTPM: 924.1
2093 Male, age 80, both hemispheres 949.0
2803 Female, age 91, both hemispheres 931.4
2801 Male, age 74, both hemispheres 919.9
2743 Female, age 85, both hemispheres 917.9
2624 Male, age 61, both hemispheres 913.8
2134 Male, age 76, both hemispheres 912.6
Motor facial nucleus
nTPM: 930.3
2062 Male, age 76, both hemispheres 997.7
2126 Male, age 61, both hemispheres 974.7
2795 Female, age 91, both hemispheres 931.3
2365 Male, age 74, right hemisphere 904.7
2697 Female, age 85, both hemispheres 897.4
2327 Male, age 80, both hemispheres 876.3
Motor hypoglossal nucleus
nTPM: 919.4
2132 Female, age 85, both hemispheres 966.2
2125 Female, age 91, both hemispheres 960.3
2182 Male, age 80, both hemispheres 939.3
2277 Male, age 76, both hemispheres 885.4
2461 Male, age 61, both hemispheres 846.0
Motor trigeminal nucleus
nTPM: 923.1
2079 Male, age 80, both hemispheres 927.3
2560 Male, age 74, both hemispheres 924.0
2335 Male, age 61, both hemispheres 923.3
2321 Female, age 91, both hemispheres 923.2
2309 Male, age 76, both hemispheres 917.9
Nuclei of the trapezoid body
nTPM: 953.0
1983 Male, age 76, both hemispheres 1054.3
2159 Male, age 61, both hemispheres 941.8
2735 Female, age 85, both hemispheres 937.1
2166 Male, age 80, both hemispheres 923.2
2368 Female, age 91, both hemispheres 908.5
Nucleus ambiguus
nTPM: 984.1
2096 Female, age 85, both hemispheres 991.8
2071 Male, age 76, both hemispheres 976.4
Nucleus cuneatus
nTPM: 946.8
2380 Male, age 80, both hemispheres 970.8
2805 Female, age 91, both hemispheres 967.0
2564 Male, age 74, both hemispheres 961.6
2808 Female, age 85, both hemispheres 949.1
2562 Male, age 61, both hemispheres 919.6
2100 Male, age 76, both hemispheres 912.9
Nucleus gracilis
nTPM: 967.0
2299 Female, age 85, both hemispheres 980.3
2382 Male, age 80, both hemispheres 976.0
2627 Male, age 74, both hemispheres 944.6
Nucleus raphe magnus
nTPM: 920.0
2051 Male, age 76, both hemispheres 935.6
2160 Male, age 61, both hemispheres 927.5
2172 Female, age 85, both hemispheres 925.7
2459 Female, age 91, both hemispheres 917.1
2455 Male, age 74, both hemispheres 914.3
2328 Male, age 80, both hemispheres 899.7
Nucleus raphe obscurus
nTPM: 960.3
2800 Male, age 61, midline 971.9
2142 Male, age 76, midline 968.8
2845 Female, age 85, midline 940.3
Nucleus raphe pallidus
nTPM: 967.5
1924 Male, age 61, midline 994.2
2145 Male, age 76, midline 973.0
2183 Male, age 80, midline 935.4
Nucleus tractus solitarii
nTPM: 904.5
2144 Female, age 91, right hemisphere 924.0
2191 Female, age 85, both hemispheres 909.9
2656 Male, age 76, both hemispheres 897.1
2307 Male, age 80, both hemispheres 886.8
Paramedian reticular nucleus
nTPM: 909.1
2057 Male, age 80, both hemispheres 935.7
2313 Male, age 61, both hemispheres 912.1
2050 Female, age 85, both hemispheres 900.8
2052 Male, age 76, both hemispheres 887.8
Parvicellular reticular nuclei
nTPM: 933.3
2095 Male, age 76, both hemispheres 946.1
2119 Male, age 80, both hemispheres 937.4
2558 Male, age 74, both hemispheres 916.4
Parvicellular reticular nuclei, medullary
nTPM: 927.4
2181 Male, age 80, left hemisphere 930.8
2091 Female, age 85, both hemispheres 929.8
2189 Female, age 91, both hemispheres 921.8
Peritrigeminal nucleus
nTPM: 955.8
2067 Female, age 85, both hemispheres 982.4
2136 Male, age 76, both hemispheres 954.4
2179 Male, age 61, both hemispheres 930.7
Pontine nuclei
nTPM: 944.2
2787 Female, age 85, both hemispheres 975.0
1968 Male, age 76, left hemisphere 973.4
2115 Male, age 80, left hemisphere 959.5
2727 Male, age 61, right hemisphere 940.4
2109 Female, age 72, unknown 940.1
1863 Male, age 55, unknown 939.5
2319 Female, age 91, both hemispheres 926.5
2454 Male, age 74, left hemisphere 899.2
Pontine raphe nucleus
nTPM: 919.1
2122 Female, age 85, midline 938.0
2853 Male, age 76, midline 900.3
Posteroventral cochlear nucleus
nTPM: 962.8
2135 Female, age 91, both hemispheres 999.3
2341 Male, age 80, both hemispheres 980.3
2371 Male, age 61, both hemispheres 972.9
2752 Female, age 85, both hemispheres 945.9
2070 Male, age 76, both hemispheres 915.8
Prepositus hypoglossal nucleus
nTPM: 947.9
2086 Male, age 80, both hemispheres 953.1
2855 Female, age 85, right hemisphere 942.7
Principal sensory trigeminal nucleus
nTPM: 913.8
2158 Male, age 61, both hemispheres 942.1
2008 Male, age 80, left hemisphere 909.1
2367 Female, age 91, left hemisphere 906.1
2324 Male, age 76, both hemispheres 898.1
Reticular pontine nucleus, caudal
nTPM: 932.8
2092 Male, age 76, both hemispheres 962.0
2559 Male, age 74, both hemispheres 955.2
2457 Female, age 91, both hemispheres 929.8
2332 Male, age 80, right hemisphere 884.3
Reticular pontine nucleus, oral
nTPM: 914.7
2167 Male, age 76, both hemispheres 918.6
2366 Female, age 91, both hemispheres 918.1
1939 Male, age 80, both hemispheres 917.9
2361 Male, age 74, both hemispheres 916.9
2012 Female, age 85, both hemispheres 901.7
Reticulotegmental nucleus
nTPM: 930.7
2452 Male, age 74, both hemispheres 974.4
2322 Female, age 91, both hemispheres 922.2
2333 Male, age 80, both hemispheres 917.3
2325 Male, age 76, both hemispheres 909.0
Spinal trigeminal nucleus, caudal
nTPM: 922.2
2642 Male, age 74, both hemispheres 931.3
2308 Male, age 80, both hemispheres 930.5
2447 Male, age 76, both hemispheres 926.7
2312 Male, age 61, both hemispheres 922.0
2390 Female, age 91, both hemispheres 900.4
Spinal trigeminal nucleus, interpolar
nTPM: 920.0
2066 Male, age 76, right hemisphere 944.4
2033 Male, age 80, both hemispheres 937.7
2389 Female, age 91, both hemispheres 923.7
2386 Female, age 85, both hemispheres 911.8
2625 Male, age 61, both hemispheres 882.4
Spinal trigeminal nucleus, oral
nTPM: 906.9
2164 Male, age 80, both hemispheres 918.1
1978 Male, age 76, both hemispheres 917.8
2737 Female, age 85, both hemispheres 884.9
Spinal vestibular nucleus
nTPM: 959.7
2384 Male, age 74, both hemispheres 1023.8
2780 Male, age 80, both hemispheres 972.9
2748 Male, age 76, both hemispheres 951.0
2806 Female, age 85, both hemispheres 942.6
2186 Female, age 91, both hemispheres 935.6
2796 Male, age 61, both hemispheres 932.3
Subcoeruleus area
nTPM: 926.6
2451 Male, age 74, both hemispheres 986.4
2369 Female, age 85, left hemisphere 926.8
2089 Male, age 76, left hemisphere 925.9
1958 Male, age 80, both hemispheres 907.1
2323 Female, age 91, left hemisphere 886.6
Superior olive
nTPM: 915.9
2020 Male, age 76, both hemispheres 956.0
2561 Female, age 91, both hemispheres 918.8
1875 Female, age 85, both hemispheres 904.6
2364 Male, age 74, right hemisphere 902.1
2329 Male, age 80, right hemisphere 897.8
Superior vestibular nucleus
nTPM: 945.8
2015 Male, age 80, both hemispheres 953.7
2383 Male, age 74, both hemispheres 946.6
2061 Male, age 76, both hemispheres 937.1
Ventral medullary reticular nucleus
nTPM: 946.3
2372 Male, age 61, both hemispheres 968.5
2060 Male, age 76, both hemispheres 924.1
Ventral periolivary nuclei
nTPM: 920.2
2023 Male, age 76, both hemispheres 946.0
2165 Male, age 80, both hemispheres 923.4
2794 Female, age 91, left hemisphere 907.8
2130 Female, age 85, both hemispheres 903.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 954.8
2118 Male, age 80, both hemispheres 1001.1
2302 Female, age 91, both hemispheres 968.7
1986 Male, age 76, both hemispheres 938.6
2180 Male, age 61, both hemispheres 936.6
2741 Female, age 85, both hemispheres 928.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 912.5
2161 Male, age 80, both hemispheres 930.8
1959 Male, age 76, both hemispheres 927.4
2456 Female, age 91, both hemispheres 917.3
2359 Male, age 61, both hemispheres 903.1
2449 Male, age 74, both hemispheres 899.1
2840 Female, age 85, both hemispheres 897.1

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 130.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 76.4
FF:10165-103B3 76 years, female 76.6
FF:10182-103D2 60 years, female 76.2
Medulla oblongata
Scaled Tags Per Million: 130.8
FF:10174-103C3 60 years, female 229.3
FF:10038-101F2 18-64 years, mixed 97.4
FF:10155-103A2 76 years, female 65.8
Pons
Scaled Tags Per Million: 83.7
FF:10033-101E6 18-54 years, mixed 83.7

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 228.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 218.4
Samples: 4

Max nTPM: 241.8
Min nTPM: 184.5
Sample A Female 184.5
Sample B Female 213.1
Sample C Male 234.0
Sample D Male 241.8
Pons
nTPM: 228.7
Samples: 4

Max nTPM: 250.3
Min nTPM: 178.7
Sample A Female 250.3
Sample B Female 178.7
Sample C Male 247.4
Sample D Male 238.4

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1013.9
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 1014.0
Samples: 4

Max nTPM: 1058.2
Min nTPM: 987.7
Sample A Male 1058.2
Sample B Male 987.7
Sample C Female 1001.3
Sample D Female 1008.6

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