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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:913.7 nTPM
GTEx:1082.7 nTPM
FANTOM5:102.7 Scaled Tags Per Million
Pig:175.1 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 913.7
Sample id Sample description nTPM
Putamen
nTPM: 913.7
1937 Female, age 91, right hemisphere 931.4
2647 Male, age 75, left hemisphere 926.5
2466 Female, age 79, unknown 923.4
1838 Male, age 80, right hemisphere 911.9
2482 Female, age 94, left hemisphere 910.1
2489 Female, age 72, unknown 906.4
1829 Male, age 74, unknown 886.5

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1082.7
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 1082.7
Samples: 205

Max nTPM: 2260.5
Min nTPM: 577.7
Std nTPM: 263.8
Median nTPM: 1016.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 2260.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 2189.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 1932.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1888.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1818.8
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 1789.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 1744.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 1675.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1665.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 1597.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 1546.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 1535.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1535.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 1506.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 1503.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 1502.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 1495.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 1483.8
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 1464.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 1459.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 1396.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 1388.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 1368.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 1360.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 1347.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 1340.0
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 1339.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 1327.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1317.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 1313.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 1312.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 1302.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 1298.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 1294.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 1292.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 1265.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 1263.5
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 1261.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 1246.3
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 1246.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 1244.4
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 1241.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 1240.0
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 1237.7
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 1235.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 1229.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 1226.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 1223.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 1220.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 1216.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 1211.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 1203.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 1196.8
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 1194.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 1187.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 1187.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 1182.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 1181.0
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 1177.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 1170.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 1168.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 1166.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1165.9
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 1164.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 1154.0
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 1152.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 1150.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 1145.9
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 1140.0
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 1132.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 1128.6
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 1114.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1105.8
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 1096.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 1095.6
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 1094.8
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 1091.5
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 1089.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 1088.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 1088.6
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 1083.7
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 1083.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 1082.7
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 1075.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 1074.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 1067.3
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 1057.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 1056.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 1054.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 1049.9
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 1048.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 1042.7
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 1040.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 1037.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 1035.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 1033.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 1032.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 1030.6
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 1028.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1025.8
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 1024.7
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 1019.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 1016.4
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 1014.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 1013.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 1011.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 1010.9
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 1007.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 1003.6
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 999.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 999.6
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 998.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 998.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 997.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 996.2
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 994.1
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 992.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 992.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 988.1
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 987.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 985.5
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 982.1
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 980.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 979.3
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 979.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 977.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 977.2
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 975.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 975.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 974.3
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 974.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 973.8
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 968.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 968.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 968.6
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 967.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 967.4
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 965.8
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 963.0
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 961.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 959.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 959.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 958.5
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 955.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 953.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 952.5
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 944.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 944.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 943.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 931.1
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 930.9
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 926.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 921.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 917.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 914.8
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 912.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 906.4
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 903.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 898.7
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 898.5
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 895.4
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 893.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 891.2
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 890.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 886.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 880.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 871.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 870.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 868.5
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 868.3
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 865.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 863.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 856.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 850.7
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 837.5
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 829.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 824.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 823.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 821.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 820.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 819.5
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 808.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 803.4
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 802.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 800.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 797.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 791.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 788.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 786.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 783.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 782.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 777.5
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 777.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 771.3
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 762.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 757.1
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 756.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 729.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 727.7
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 715.3
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 714.1
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 713.7
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 694.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 693.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 577.7
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 102.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 102.7
FF:10176-103C5 60 years, female 102.7

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 175.1
Pig sample Sample description nTPM
Putamen
nTPM: 175.2
Samples: 4

Max nTPM: 209.0
Min nTPM: 149.8
Sample A Female 175.9
Sample B Female 149.8
Sample C Male 209.0
Sample D Male 165.9

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