MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:85.7 nTPM
HPA:85.7 nTPM
GTEx:140.6 nTPM
FANTOM5:1.9 Scaled Tags Per Million
Pig:742.0 nTPM
Mouse:226.2 nTPM
Allen mouse:8.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.9
2019 Male, age 18, unknown 133.2
1827 Male, age 72, unknown 41.7
2828 Female, age 72, unknown 38.8
2586 Male, age 75, left hemisphere 29.2
2666 Male, age 74, left hemisphere 26.2
2219 Male, age 76, both hemispheres 26.0
2411 Female, age 72, unknown 25.6
1830 Male, age 51, unknown 24.4
1833 Male, age 53, unknown 19.0
1870 Female, age 42, unknown 15.1
Dorsal raphe nucleus
nTPM: 26.4
1828 Male, age 53, unknown 62.4
2047 Male, age 72, unknown 31.9
2750 Male, age 76, both hemispheres 16.0
2016 Female, age 72, unknown 11.3
2298 Female, age 72, unknown 10.4
Inferior colliculus
nTPM: 58.5
1890 Male, age 53, unknown 89.9
2097 Female, age 72, unknown 83.1
1848 Female, age 42, unknown 46.2
2849 Male, age 72, unknown 14.9
Median raphe nucleus
nTPM: 8.2
2220 Male, age 76, midline 8.2
Pedunculopontine tegmental nucleus
nTPM: 43.7
1921 Female, age 85, both hemispheres 64.8
2338 Male, age 61, both hemispheres 43.9
2334 Male, age 80, both hemispheres 22.5
Periaquaductal grey, anterior
nTPM: 19.5
1795 Male, age 51, unknown 26.8
1947 Male, age 18, unknown 18.1
2502 Female, age 75, unknown 13.5
Periaquaductal grey, dorsal
nTPM: 15.0
1831 Male, age 72, unknown 25.9
2464 Female, age 72, unknown 20.1
2850 Male, age 76, both hemispheres 7.6
1840 Male, age 53, unknown 6.4
Periaquaductal grey, lateral
nTPM: 15.6
2053 Male, age 18, unknown 25.5
2272 Male, age 74, both hemispheres 13.5
2140 Male, age 76, both hemispheres 7.8
Pretectal area
nTPM: 84.1
1817 Female, age 42, unknown 203.2
1944 Female, age 72, unknown 197.8
1816 Male, age 51, unknown 176.8
2007 Male, age 72, unknown 118.9
1815 Male, age 53, unknown 72.9
2667 Female, age 75, unknown 58.1
2407 Male, age 75, both hemispheres 36.4
2316 Male, age 76, right hemisphere 24.2
2273 Male, age 74, both hemispheres 17.5
2825 Male, age 18, unknown 11.8
2224 Female, age 72, unknown 7.7
Red nucleus
nTPM: 85.7
1821 Female, age 72, unknown 126.0
2785 Male, age 18, unknown 124.8
2823 Male, age 76, right hemisphere 124.1
1865 Male, age 51, unknown 99.5
2588 Male, age 74, left hemisphere 88.7
2503 Female, age 72, unknown 83.3
1954 Female, age 42, unknown 81.2
2725 Female, age 75, unknown 77.1
1904 Male, age 53, unknown 61.4
2227 Male, age 72, unknown 60.3
2769 Male, age 72, unknown 53.6
2584 Male, age 75, left hemisphere 47.8
Substantia nigra
nTPM: 26.8
1889 Female, age 72, unknown 104.9
2590 Female, age 75, unknown 25.4
1916 Female, age 42, unknown 24.3
1941 Male, age 53, unknown 24.1
2409 Female, age 72, unknown 22.1
2583 Male, age 75, right hemisphere 19.9
1851 Male, age 51, unknown 17.5
2665 Male, age 74, both hemispheres 14.7
2699 Male, age 18, unknown 7.7
2241 Male, age 72, unknown 7.3
Superior colliculus
nTPM: 53.0
2087 Female, age 72, unknown 142.9
1913 Female, age 42, unknown 75.5
1995 Male, age 72, unknown 67.6
1895 Male, age 76, right hemisphere 66.1
2261 Male, age 18, unknown 52.2
1796 Male, age 53, unknown 34.5
2668 Female, age 75, unknown 33.5
1839 Male, age 51, unknown 24.5
2587 Male, age 74, left hemisphere 22.8
2664 Male, age 75, both hemispheres 10.7
Ventral tegmental area
nTPM: 21.9
2410 Female, age 72, unknown 43.8
2223 Female, age 72, unknown 31.8
1915 Female, age 42, unknown 22.7
2218 Male, age 76, both hemispheres 13.3
2021 Male, age 53, unknown 11.6
1942 Male, age 51, unknown 8.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 140.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 140.6
Samples: 139

Max nTPM: 1128.0
Min nTPM: 1.7
Std nTPM: 194.8
Median nTPM: 53.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1128.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 923.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 781.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 676.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 608.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 552.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 510.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 498.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 492.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 483.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 483.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.9
FF:10158-103A5 76 years, female 1.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 742.0
Pig sample Sample description nTPM
Midbrain
nTPM: 242.6
Samples: 4

Max nTPM: 434.2
Min nTPM: 63.2
Sample A Female 137.5
Sample B Female 63.2
Sample C Male 434.2
Sample D Male 335.5
Periaqueductal gray
nTPM: 32.1
Samples: 3

Max nTPM: 55.1
Min nTPM: 19.0
Sample B Female 55.1
Sample C Male 22.3
Sample D Male 19.0
Substantia nigra
nTPM: 99.9
Samples: 4

Max nTPM: 219.8
Min nTPM: 27.0
Sample A Female 219.8
Sample B Female 38.0
Sample C Male 27.0
Sample D Male 114.7
Superior colliculi
nTPM: 742.0
Samples: 4

Max nTPM: 1305.6
Min nTPM: 295.4
Sample A Female 1009.4
Sample B Female 357.4
Sample C Male 1305.6
Sample D Male 295.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 226.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 226.2
Samples: 4

Max nTPM: 234.3
Min nTPM: 220.3
Sample A Male 221.0
Sample B Male 220.3
Sample C Female 234.3
Sample D Female 229.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.5
75457579 Antisense, RP_060523_03_E07, Mouse strain C57BL/6J (56 days, male) 10.5
75492814 Antisense, RP_060523_03_G07, Mouse strain C57BL/6J (56 days, male) 9.9
75457580 Antisense, RP_060523_03_F07, Mouse strain C57BL/6J (56 days, male) 9.8
75496180 Antisense, RP_060523_03_E07, Mouse strain C57BL/6J (56 days, male) 9.8
75496597 Antisense, RP_060523_03_E07, Mouse strain C57BL/6J (56 days, male) 9.6
75457591 Antisense, RP_060523_03_H07, Mouse strain C57BL/6J (56 days, male) 9.3
75492803 Antisense, RP_060523_03_E07, Mouse strain C57BL/6J (56 days, male) 9.3
75457581 Antisense, RP_060523_03_G07, Mouse strain C57BL/6J (56 days, male) 9.2
75496607 Antisense, RP_060523_03_F07, Mouse strain C57BL/6J (56 days, male) 9.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.