We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PVALB
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PVALB
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:275.5 nTPM
HPA:275.5 nTPM
FANTOM5:12.4 Scaled Tags Per Million
Pig:252.6 nTPM
Mouse:209.0 nTPM
Allen mouse:6.0 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 275.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 101.4
2032 Female, age 42, unknown 165.9
2396 Male, age 61, right hemisphere 71.6
2497 Male, age 66, unknown 66.9
Centromedial thalamic nucleus
nTPM: 145.8
2401 Male, age 76, right hemisphere 284.7
2279 Female, age 85, left hemisphere 6.9
Habenula
nTPM: 107.3
1957 Male, age 80, both hemispheres 171.4
2203 Male, age 61, left hemisphere 151.5
2252 Male, age 62, unknown 64.8
2276 Male, age 66, unknown 41.3
Lateral geniculate body
nTPM: 275.5
2106 Female, age 67, right hemisphere 849.3
2399 Male, age 61, left hemisphere 465.8
2035 Female, age 72, unknown 213.6
1953 Male, age 62, unknown 196.2
2841 Male, age 80, both hemispheres 180.3
2857 Male, age 74, right hemisphere 102.3
2659 Male, age 66, unknown 100.2
2575 Female, age 94, right hemisphere 96.0
Lateral thalamic nuclei
nTPM: 115.4
2765 Female, age 67, both hemispheres 189.2
1903 Male, age 76, left hemisphere 167.7
2573 Female, age 94, left hemisphere 82.1
2661 Female, age 72, unknown 78.1
2577 Male, age 74, both hemispheres 59.9
Medial dorsal thalamic nucleus
nTPM: 104.6
2283 Male, age 80, right hemisphere 309.2
1859 Male, age 76, both hemispheres 244.0
1971 Male, age 61, right hemisphere 139.4
2572 Female, age 94, right hemisphere 104.7
1810 Male, age 48, unknown 96.4
2026 Male, age 62, unknown 93.8
1930 Female, age 42, unknown 71.1
2402 Female, age 67, both hemispheres 65.3
2498 Male, age 66, unknown 64.9
2660 Female, age 72, unknown 64.9
2576 Male, age 74, both hemispheres 60.3
2492 Male, age 75, right hemisphere 37.2
2039 Female, age 72, unknown 8.7
Medial geniculate body
nTPM: 131.2
2650 Female, age 94, left hemisphere 235.6
1811 Female, age 42, unknown 211.2
2207 Male, age 80, right hemisphere 210.7
2657 Male, age 74, right hemisphere 126.6
2217 Female, age 72, unknown 72.7
2571 Male, age 75, right hemisphere 35.6
2049 Male, age 76, both hemispheres 25.8
Nucleus reuniens
nTPM: 23.0
2210 Female, age 85, left hemisphere 31.6
2212 Female, age 67, left hemisphere 20.2
2205 Male, age 80, left hemisphere 17.2
Nucleus rhomboideus
nTPM: 148.5
2206 Male, age 80, both hemispheres 294.7
2213 Female, age 67, left hemisphere 88.3
2280 Female, age 85, left hemisphere 62.4
Posterior thalamic nucleus
nTPM: 100.5
2266 Male, age 76, right hemisphere 251.6
2655 Male, age 74, right hemisphere 68.6
2649 Female, age 94, both hemispheres 43.3
2495 Female, age 67, right hemisphere 38.5
Pulvinar
nTPM: 214.8
1932 Male, age 80, right hemisphere 426.2
2398 Male, age 61, left hemisphere 390.7
2214 Male, age 76, right hemisphere 231.5
2496 Female, age 67, right hemisphere 227.6
1972 Male, age 62, unknown 181.1
2499 Male, age 66, unknown 171.8
2724 Male, age 74, right hemisphere 149.2
1899 Female, age 42, unknown 144.0
2582 Female, age 72, unknown 124.0
1929 Male, age 48, unknown 101.7
Subthalamic nucleus
nTPM: 41.6
2658 Male, age 74, both hemispheres 96.3
2282 Male, age 61, both hemispheres 89.2
2275 Male, age 66, unknown 42.8
2124 Male, age 62, unknown 31.8
2216 Male, age 48, unknown 31.3
2056 Female, age 72, unknown 24.1
2779 Female, age 42, unknown 11.3
2406 Female, age 72, unknown 6.2
Ventral posterolateral thalamic nucleus
nTPM: 224.9
2397 Male, age 61, right hemisphere 354.0
2740 Male, age 76, right hemisphere 343.3
2197 Male, age 80, both hemispheres 319.5
2581 Female, age 72, unknown 123.9
2578 Male, age 74, both hemispheres 110.3
2570 Male, age 75, right hemisphere 98.4
Ventral posteromedial thalamic nucleus
nTPM: 178.1
2758 Male, age 80, both hemispheres 359.7
2202 Male, age 61, left hemisphere 297.1
2281 Male, age 75, right hemisphere 91.4
2127 Male, age 76, right hemisphere 73.2
2653 Male, age 74, both hemispheres 69.0
Ventral thalamic nuclei
nTPM: 123.3
1860 Male, age 76, both hemispheres 316.2
2204 Male, age 80, both hemispheres 163.2
2858 Female, age 72, unknown 136.5
2285 Male, age 62, unknown 135.2
1845 Male, age 48, unknown 113.6
2580 Male, age 66, unknown 99.2
1912 Female, age 42, unknown 74.2
2652 Male, age 74, left hemisphere 36.0
2291 Female, age 72, unknown 35.5
Ventromedial nucleus
nTPM: 6.0
1822 Female, age 42, unknown 6.0
1982 Female, age 72, unknown 6.0
Zona incerta
nTPM: 57.7
2208 Male, age 80, right hemisphere 113.6
2822 Male, age 74, right hemisphere 97.9
2215 Male, age 66, unknown 37.2
2663 Female, age 72, unknown 28.8
2403 Male, age 62, unknown 11.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 12.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 12.4
FF:10154-103A1 76 years, female 12.4

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 252.6
Pig sample Sample description nTPM
Thalamus
nTPM: 252.6
Samples: 4

Max nTPM: 514.6
Min nTPM: 117.9
Sample A Female 117.9
Sample B Female 192.3
Sample C Male 514.6
Sample D Male 185.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 209.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 209.0
Samples: 4

Max nTPM: 215.4
Min nTPM: 203.3
Sample A Male 203.3
Sample B Male 212.4
Sample C Female 215.4
Sample D Female 205.0

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 6.0
75492814 Antisense, RP_060523_03_G07, Mouse strain C57BL/6J (56 days, male) 9.0
75457581 Antisense, RP_060523_03_G07, Mouse strain C57BL/6J (56 days, male) 8.4
75457591 Antisense, RP_060523_03_H07, Mouse strain C57BL/6J (56 days, male) 7.7
75496191 Antisense, RP_060523_03_G07, Mouse strain C57BL/6J (56 days, male) 7.6
75496201 Antisense, RP_060523_03_H07, Mouse strain C57BL/6J (56 days, male) 6.9
75496608 Antisense, RP_060523_03_G07, Mouse strain C57BL/6J (56 days, male) 6.6
75457580 Antisense, RP_060523_03_F07, Mouse strain C57BL/6J (56 days, male) 6.2
75496619 Antisense, RP_060523_03_H07, Mouse strain C57BL/6J (56 days, male) 6.1
75457579 Antisense, RP_060523_03_E07, Mouse strain C57BL/6J (56 days, male) 6.0
75492824 Antisense, RP_060523_03_H07, Mouse strain C57BL/6J (56 days, male) 5.8
75492804 Antisense, RP_060523_03_F07, Mouse strain C57BL/6J (56 days, male) 5.7
100055042 Antisense, RP_080522_01_A03, Mouse strain C57BL/6J (56 days, male) 5.6
75496180 Antisense, RP_060523_03_E07, Mouse strain C57BL/6J (56 days, male) 5.6
75492803 Antisense, RP_060523_03_E07, Mouse strain C57BL/6J (56 days, male) 5.5
75496190 Antisense, RP_060523_03_F07, Mouse strain C57BL/6J (56 days, male) 4.7
75496597 Antisense, RP_060523_03_E07, Mouse strain C57BL/6J (56 days, male) 4.7
79556738 Antisense, RP_071204_01_E06, Mouse strain C57BL/6J (56 days, male) 4.2
75496607 Antisense, RP_060523_03_F07, Mouse strain C57BL/6J (56 days, male) 4.1
100055067 Antisense, RP_080522_01_A03, Mouse strain C57BL/6J (56 days, male) 3.3
100055064 Antisense, RP_080522_01_A03, Mouse strain C57BL/6J (56 days, male) 3.2
868 Antisense, RP_Baylor_253963, Mouse strain C57BL/6J (56 days, male) 3.1
869 Antisense, RP_Baylor_253963, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.