MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:84.1 nTPM
HPA:84.1 nTPM
GTEx:76.1 nTPM
FANTOM5:125.1 Scaled Tags Per Million
Pig:135.3 nTPM
Mouse:151.1 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.4
2019 Male, age 18, unknown 83.6
2411 Female, age 72, unknown 83.6
1870 Female, age 42, unknown 83.5
1827 Male, age 72, unknown 82.4
1833 Male, age 53, unknown 82.0
1830 Male, age 51, unknown 81.2
2828 Female, age 72, unknown 80.7
2666 Male, age 74, left hemisphere 79.9
2219 Male, age 76, both hemispheres 79.5
2586 Male, age 75, left hemisphere 77.6
Dorsal raphe nucleus
nTPM: 83.8
2750 Male, age 76, both hemispheres 86.3
2298 Female, age 72, unknown 85.7
1828 Male, age 53, unknown 83.8
2047 Male, age 72, unknown 82.5
2016 Female, age 72, unknown 80.4
Inferior colliculus
nTPM: 81.4
2097 Female, age 72, unknown 84.1
1890 Male, age 53, unknown 81.6
1848 Female, age 42, unknown 80.7
2849 Male, age 72, unknown 79.4
Median raphe nucleus
nTPM: 82.9
2220 Male, age 76, midline 82.9
Pedunculopontine tegmental nucleus
nTPM: 84.1
2334 Male, age 80, both hemispheres 85.0
1921 Female, age 85, both hemispheres 83.9
2338 Male, age 61, both hemispheres 83.3
Periaquaductal grey, anterior
nTPM: 81.5
1947 Male, age 18, unknown 82.4
2502 Female, age 75, unknown 82.2
1795 Male, age 51, unknown 79.9
Periaquaductal grey, dorsal
nTPM: 80.2
2464 Female, age 72, unknown 81.2
1831 Male, age 72, unknown 80.2
2850 Male, age 76, both hemispheres 80.0
1840 Male, age 53, unknown 79.3
Periaquaductal grey, lateral
nTPM: 80.3
2053 Male, age 18, unknown 81.4
2272 Male, age 74, both hemispheres 80.7
2140 Male, age 76, both hemispheres 78.8
Pretectal area
nTPM: 82.2
2007 Male, age 72, unknown 84.6
1816 Male, age 51, unknown 83.8
1817 Female, age 42, unknown 83.8
1815 Male, age 53, unknown 83.0
2224 Female, age 72, unknown 82.9
2316 Male, age 76, right hemisphere 82.8
1944 Female, age 72, unknown 82.3
2273 Male, age 74, both hemispheres 81.7
2825 Male, age 18, unknown 81.0
2667 Female, age 75, unknown 79.9
2407 Male, age 75, both hemispheres 78.0
Red nucleus
nTPM: 82.9
1821 Female, age 72, unknown 87.0
2503 Female, age 72, unknown 84.6
2823 Male, age 76, right hemisphere 84.3
2227 Male, age 72, unknown 83.6
1954 Female, age 42, unknown 83.4
1865 Male, age 51, unknown 83.2
2725 Female, age 75, unknown 82.8
1904 Male, age 53, unknown 82.5
2769 Male, age 72, unknown 82.3
2785 Male, age 18, unknown 82.2
2588 Male, age 74, left hemisphere 81.2
2584 Male, age 75, left hemisphere 77.9
Substantia nigra
nTPM: 82.4
1889 Female, age 72, unknown 85.8
1851 Male, age 51, unknown 84.3
1916 Female, age 42, unknown 84.1
1941 Male, age 53, unknown 82.9
2409 Female, age 72, unknown 82.7
2590 Female, age 75, unknown 82.4
2241 Male, age 72, unknown 82.1
2665 Male, age 74, both hemispheres 80.4
2699 Male, age 18, unknown 80.0
2583 Male, age 75, right hemisphere 79.2
Superior colliculus
nTPM: 81.6
2587 Male, age 74, left hemisphere 84.0
1895 Male, age 76, right hemisphere 83.2
2668 Female, age 75, unknown 82.8
1913 Female, age 42, unknown 82.4
1796 Male, age 53, unknown 81.6
1839 Male, age 51, unknown 81.3
1995 Male, age 72, unknown 81.1
2261 Male, age 18, unknown 81.1
2087 Female, age 72, unknown 80.6
2664 Male, age 75, both hemispheres 78.1
Ventral tegmental area
nTPM: 82.5
2410 Female, age 72, unknown 84.2
1915 Female, age 42, unknown 83.1
2218 Male, age 76, both hemispheres 83.1
2223 Female, age 72, unknown 82.9
2021 Male, age 53, unknown 81.0
1942 Male, age 51, unknown 80.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.1
Samples: 139

Max nTPM: 171.0
Min nTPM: 46.0
Std nTPM: 17.2
Median nTPM: 71.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 171.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 139.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 117.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 114.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 113.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 112.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 112.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 105.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 103.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 102.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 100.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.1
FF:10158-103A5 76 years, female 125.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 135.3
Pig sample Sample description nTPM
Midbrain
nTPM: 135.4
Samples: 4

Max nTPM: 207.8
Min nTPM: 101.6
Sample A Female 207.8
Sample B Female 125.1
Sample C Male 101.6
Sample D Male 106.9
Periaqueductal gray
nTPM: 102.3
Samples: 3

Max nTPM: 105.2
Min nTPM: 100.7
Sample B Female 105.2
Sample C Male 101.1
Sample D Male 100.7
Substantia nigra
nTPM: 121.6
Samples: 4

Max nTPM: 160.7
Min nTPM: 100.1
Sample A Female 160.7
Sample B Female 100.1
Sample C Male 103.7
Sample D Male 121.7
Superior colliculi
nTPM: 125.5
Samples: 4

Max nTPM: 153.9
Min nTPM: 92.2
Sample A Female 153.9
Sample B Female 92.2
Sample C Male 132.5
Sample D Male 123.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 151.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 151.1
Samples: 4

Max nTPM: 156.3
Min nTPM: 145.1
Sample A Male 156.3
Sample B Male 154.2
Sample C Female 145.1
Sample D Female 148.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
69262239 Antisense, RP_050301_01_G10, Mouse strain C57BL/6J (56 days, male) 4.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.