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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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31.272
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:147.8 nTPM
HPA:147.8 nTPM
FANTOM5:194.0 Scaled Tags Per Million
Pig:149.3 nTPM
Allen mouse:12.3 Expression energy

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA001097
Pons mean intensity 31.272
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus -
Parabrachial nucleus -
Principle sensory trigeminal nucleus 24.445
Locus coeruleus 31.272
Pontine nucleus 24.788
Vestibular nucleus 22.281
Pontine reticular nucleus, oral 18.987
Lateral lemniscus 7.597
Superior paraolivary nucleus -

PONS - HPA Brain RNA-seq
Max nTPM 147.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 126.5
1984 Male, age 76, both hemispheres 132.9
2301 Female, age 85, both hemispheres 128.4
2188 Female, age 91, both hemispheres 123.1
2090 Male, age 80, both hemispheres 121.4
Dorsal cochlear nucleus
nTPM: 132.6
2802 Male, age 74, right hemisphere 139.2
2058 Male, age 76, both hemispheres 136.9
2370 Male, age 61, both hemispheres 133.3
2378 Male, age 80, both hemispheres 130.1
2187 Female, age 91, both hemispheres 123.5
Dorsal tegmental nucleus
nTPM: 130.1
2083 Male, age 80, both hemispheres 141.5
2326 Male, age 74, both hemispheres 131.2
1936 Male, age 76, left hemisphere 130.4
2358 Male, age 61, both hemispheres 117.5
Dorsolateral tegmental area
nTPM: 127.3
2751 Female, age 85, both hemispheres 142.4
2654 Male, age 80, both hemispheres 137.9
2141 Male, age 76, both hemispheres 133.2
2360 Male, age 74, both hemispheres 117.3
2337 Male, age 61, both hemispheres 105.6
Kolliker-Fuse nucleus
nTPM: 135.3
2163 Male, age 80, both hemispheres 142.4
2315 Male, age 76, right hemisphere 133.5
2793 Female, age 91, left hemisphere 130.1
Lateral lemniscal nuclei
nTPM: 142.7
2169 Male, age 76, both hemispheres 156.9
2746 Female, age 85, left hemisphere 147.7
2036 Male, age 80, both hemispheres 142.2
2453 Male, age 74, right hemisphere 141.1
2320 Female, age 91, left hemisphere 125.8
Lateral parabrachial nucleus
nTPM: 129.4
2139 Female, age 85, right hemisphere 156.7
2013 Male, age 80, both hemispheres 130.1
2792 Male, age 76, both hemispheres 118.8
2790 Male, age 61, both hemispheres 111.9
Lateral vestibular nucleus
nTPM: 132.7
2184 Male, age 76, both hemispheres 142.8
2311 Male, age 80, both hemispheres 122.6
Locus coeruleus
nTPM: 134.0
2123 Female, age 91, both hemispheres 150.5
2014 Male, age 55, unknown 135.4
2317 Female, age 72, unknown 134.9
1980 Male, age 76, both hemispheres 134.3
2720 Male, age 74, both hemispheres 130.8
2162 Male, age 80, both hemispheres 128.3
2788 Male, age 74, unknown 123.5
Medial olivary nucleus
nTPM: 122.0
2138 Female, age 91, both hemispheres 138.1
2851 Male, age 80, both hemispheres 119.8
1962 Male, age 76, both hemispheres 117.6
1943 Male, age 61, both hemispheres 112.5
Medial parabrachial nucleus
nTPM: 132.6
2463 Female, age 85, right hemisphere 136.2
2170 Female, age 91, both hemispheres 135.2
2854 Male, age 80, both hemispheres 135.0
2786 Male, age 76, both hemispheres 131.6
2156 Male, age 61, both hemispheres 125.1
Medial periolivary nuclei
nTPM: 136.8
2171 Female, age 85, both hemispheres 159.6
2063 Male, age 76, both hemispheres 156.0
2791 Male, age 74, right hemisphere 131.1
2081 Male, age 80, both hemispheres 119.5
2458 Female, age 91, both hemispheres 117.7
Motor facial nucleus
nTPM: 137.3
2062 Male, age 76, both hemispheres 167.4
2795 Female, age 91, both hemispheres 142.3
2365 Male, age 74, right hemisphere 136.1
2697 Female, age 85, both hemispheres 131.4
2327 Male, age 80, both hemispheres 123.9
2126 Male, age 61, both hemispheres 122.6
Motor trigeminal nucleus
nTPM: 129.2
2560 Male, age 74, both hemispheres 140.7
2079 Male, age 80, both hemispheres 134.0
2309 Male, age 76, both hemispheres 131.6
2335 Male, age 61, both hemispheres 127.5
2321 Female, age 91, both hemispheres 112.4
Nuclei of the trapezoid body
nTPM: 147.8
2159 Male, age 61, both hemispheres 167.5
2735 Female, age 85, both hemispheres 158.0
1983 Male, age 76, both hemispheres 155.8
2368 Female, age 91, both hemispheres 130.8
2166 Male, age 80, both hemispheres 127.0
Paramedian reticular nucleus
nTPM: 136.9
2050 Female, age 85, both hemispheres 150.8
2057 Male, age 80, both hemispheres 140.4
2313 Male, age 61, both hemispheres 140.1
2052 Male, age 76, both hemispheres 116.3
Pontine nuclei
nTPM: 146.5
2787 Female, age 85, both hemispheres 178.4
1863 Male, age 55, unknown 164.1
2727 Male, age 61, right hemisphere 159.6
1968 Male, age 76, left hemisphere 150.3
2109 Female, age 72, unknown 148.0
2319 Female, age 91, both hemispheres 126.2
2115 Male, age 80, left hemisphere 125.6
2454 Male, age 74, left hemisphere 119.4
Pontine raphe nucleus
nTPM: 142.1
2122 Female, age 85, midline 153.1
2853 Male, age 76, midline 131.0
Posteroventral cochlear nucleus
nTPM: 127.5
2752 Female, age 85, both hemispheres 142.7
2070 Male, age 76, both hemispheres 127.7
2371 Male, age 61, both hemispheres 126.9
2135 Female, age 91, both hemispheres 120.3
2341 Male, age 80, both hemispheres 119.7
Principal sensory trigeminal nucleus
nTPM: 141.9
2158 Male, age 61, both hemispheres 167.8
2324 Male, age 76, both hemispheres 143.2
2008 Male, age 80, left hemisphere 140.2
2367 Female, age 91, left hemisphere 116.4
Reticular pontine nucleus, caudal
nTPM: 130.8
2092 Male, age 76, both hemispheres 142.1
2332 Male, age 80, right hemisphere 133.2
2457 Female, age 91, both hemispheres 125.3
2559 Male, age 74, both hemispheres 122.5
Reticular pontine nucleus, oral
nTPM: 137.0
2012 Female, age 85, both hemispheres 147.6
1939 Male, age 80, both hemispheres 142.0
2167 Male, age 76, both hemispheres 140.6
2366 Female, age 91, both hemispheres 130.6
2361 Male, age 74, both hemispheres 124.1
Reticulotegmental nucleus
nTPM: 132.3
2325 Male, age 76, both hemispheres 139.4
2452 Male, age 74, both hemispheres 136.7
2333 Male, age 80, both hemispheres 127.8
2322 Female, age 91, both hemispheres 125.5
Spinal trigeminal nucleus, oral
nTPM: 132.5
2737 Female, age 85, both hemispheres 137.1
2164 Male, age 80, both hemispheres 131.1
1978 Male, age 76, both hemispheres 129.2
Subcoeruleus area
nTPM: 135.2
2089 Male, age 76, left hemisphere 137.3
2323 Female, age 91, left hemisphere 136.0
2369 Female, age 85, left hemisphere 135.7
1958 Male, age 80, both hemispheres 134.3
2451 Male, age 74, both hemispheres 132.4
Superior olive
nTPM: 134.9
1875 Female, age 85, both hemispheres 151.1
2020 Male, age 76, both hemispheres 142.3
2364 Male, age 74, right hemisphere 132.4
2329 Male, age 80, right hemisphere 128.1
2561 Female, age 91, both hemispheres 120.7
Superior vestibular nucleus
nTPM: 128.5
2061 Male, age 76, both hemispheres 134.3
2015 Male, age 80, both hemispheres 129.8
2383 Male, age 74, both hemispheres 121.3
Ventral periolivary nuclei
nTPM: 139.4
2130 Female, age 85, both hemispheres 162.7
2165 Male, age 80, both hemispheres 146.9
2023 Male, age 76, both hemispheres 130.2
2794 Female, age 91, left hemisphere 117.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 133.2
2840 Female, age 85, both hemispheres 145.2
2449 Male, age 74, both hemispheres 142.6
1959 Male, age 76, both hemispheres 136.6
2161 Male, age 80, both hemispheres 132.4
2456 Female, age 91, both hemispheres 123.9
2359 Male, age 61, both hemispheres 118.6

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 194.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 173.8
FF:10182-103D2 60 years, female 211.2
FF:10165-103B3 76 years, female 136.4
Pons
Scaled Tags Per Million: 194.0
FF:10033-101E6 18-54 years, mixed 194.0

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 149.3
Pig sample Sample description nTPM
Pons
nTPM: 149.3
Samples: 4

Max nTPM: 178.0
Min nTPM: 120.2
Sample A Female 178.0
Sample B Female 120.2
Sample C Male 130.5
Sample D Male 168.4

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 12.3
67978674 Antisense, RP_040923_01_E08, Mouse strain C57BL/6J (56 days, male) 12.3

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.