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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM EPIDIDYMIS
ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:158.5 nTPM
HPA:158.5 nTPM
GTEx:102.4 nTPM
FANTOM5:392.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA001097
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 158.5
overview
Male, age 65
Small intestine sample 232
nTPM: 187
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 146.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 153
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 148.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 102.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 102.4
Samples: 187

Max nTPM: 401.9
Min nTPM: 26.4
Std nTPM: 69.0
Median nTPM: 84.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 401.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 297.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 282.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 278.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 269.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 265.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 263.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 250.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 249.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 249.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 249.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 239.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 237.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 227.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 226.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 225.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 221.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 213.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 209.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 204.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 203.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 202.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 201.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 199.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 194.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 192.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 192.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 190.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 179.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 179.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 174.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 172.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 171.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 167.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 158.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 157.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 157.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 156.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 144.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 144.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 143.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 141.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 140.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 139.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 136.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 132.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 132.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 129.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 129.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 128.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 126.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 124.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 122.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 119.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 116.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 115.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 113.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 113.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 111.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 110.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 109.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 109.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 107.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 105.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 104.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 104.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 103.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 103.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 102.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 102.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 102.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 101.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 96.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 94.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 93.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 92.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 92.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 92.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 91.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 90.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 90.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 90.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 89.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 89.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 89.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 89.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 88.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 88.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 87.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 87.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 87.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 87.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 86.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 84.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 84.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 83.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 82.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 82.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 82.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 80.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 79.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 79.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 77.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 77.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 77.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 77.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 77.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 73.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 73.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 72.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 72.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 67.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 67.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 66.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 65.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 65.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 65.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 64.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 62.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 61.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 61.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 60.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 59.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 58.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 57.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 56.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 56.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 56.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 52.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 51.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 51.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 50.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 50.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 49.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 49.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 49.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 49.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 48.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 48.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 47.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 47.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 47.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 46.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 45.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 43.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 42.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 42.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 41.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 41.7
GTEX-1192X-2526-SM-59868 50-59 years, male 41.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 41.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 41.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 41.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 40.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 40.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 40.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 40.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 40.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 40.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 40.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 40.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 39.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 39.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 38.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 38.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 38.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 38.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 38.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 37.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 37.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 36.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 36.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 35.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 35.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 35.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 35.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 34.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 33.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 33.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 33.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 32.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 32.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 31.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 29.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 28.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 27.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 26.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 392.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 392.4
FF:10024-101D6 15,40,85 years, mixed 392.4

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The Human Protein Atlas project is funded
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