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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:239.3 nTPM
HPA:239.3 nTPM
GTEx:195.5 nTPM
FANTOM5:227.2 Scaled Tags Per Million
Pig:100.6 nTPM
Mouse:147.8 nTPM
Allen mouse:7.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 239.3
Sample id Sample description nTPM
Amygdala
nTPM: 235.7
1987 Female, age 91, left hemisphere 251.7
2695 Female, age 67, right hemisphere 250.8
2517 Female, age 94, left hemisphere 240.1
2514 Male, age 75, right hemisphere 235.0
2814 Male, age 76, right hemisphere 201.0
Basal amygdala
nTPM: 228.1
2609 Male, age 75, right hemisphere 271.6
2243 Female, age 91, right hemisphere 228.9
2110 Male, age 80, left hemisphere 220.6
2685 Female, age 94, left hemisphere 217.7
1955 Male, age 76, both hemispheres 215.8
2827 Female, age 67, right hemisphere 214.0
Central amygdala
nTPM: 239.3
2515 Male, age 75, right hemisphere 278.4
2826 Female, age 94, left hemisphere 247.2
2701 Female, age 91, right hemisphere 231.2
2239 Male, age 80, left hemisphere 225.6
1905 Male, age 76, both hemispheres 214.0
Corticomedial amygdala
nTPM: 219.8
2428 Male, age 75, right hemisphere 252.8
2829 Male, age 80, left hemisphere 230.3
2242 Female, age 91, right hemisphere 230.2
2535 Female, age 67, right hemisphere 204.4
2429 Female, age 94, left hemisphere 201.0
2240 Male, age 76, both hemispheres 200.3
Lateral amygdala
nTPM: 238.1
2516 Male, age 75, right hemisphere 266.5
2256 Male, age 80, left hemisphere 252.0
2255 Female, age 91, right hemisphere 242.2
2830 Female, age 67, right hemisphere 236.6
2534 Female, age 94, left hemisphere 224.9
1883 Male, age 76, both hemispheres 206.3
Stria terminalis, bed nucleus
nTPM: 199.1
2201 Male, age 74, unknown 209.1
1974 Female, age 91, both hemispheres 198.0
2486 Female, age 94, both hemispheres 190.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 195.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 195.5
Samples: 152

Max nTPM: 482.2
Min nTPM: 1.5
Std nTPM: 88.3
Median nTPM: 189.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 482.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 443.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 411.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 402.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 396.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 370.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 362.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 351.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 338.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 329.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 328.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 322.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 312.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 310.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 310.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 309.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 308.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 303.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 301.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 295.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 291.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 284.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 283.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 283.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 278.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 272.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 267.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 266.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 266.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 264.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 262.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 257.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 256.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 256.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 254.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 250.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 250.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 250.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 248.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 246.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 241.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 241.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 240.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 240.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 239.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 238.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 237.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 237.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 232.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 231.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 227.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 227.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 227.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 226.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 225.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 225.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 219.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 218.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 218.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 215.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 214.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 213.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 212.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 212.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 211.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 211.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 209.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 205.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 204.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 202.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 201.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 200.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 194.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 194.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 194.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 193.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 186.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 182.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 181.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 181.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 179.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 179.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 177.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 175.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 175.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 174.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 174.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 171.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 168.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 167.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 167.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 167.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 166.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 164.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 161.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 161.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 160.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 160.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 159.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 159.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 157.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 155.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 152.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 151.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 146.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 146.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 146.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 146.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 138.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 137.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 137.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 136.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 136.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 135.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 134.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 133.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 132.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 132.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 131.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 129.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 127.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 125.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 125.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 120.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 120.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 120.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 115.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 114.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 113.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 113.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 110.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 103.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 102.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 101.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 98.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 94.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 93.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 85.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 78.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 66.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 59.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 58.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 57.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 56.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 54.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 42.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 37.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 36.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 32.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 31.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 20.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 227.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 227.2
FF:10151-102I7 76 years, female 227.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.6
Pig sample Sample description nTPM
Amygdala
nTPM: 100.6
Samples: 4

Max nTPM: 109.6
Min nTPM: 92.3
Sample A Female 109.6
Sample B Female 92.3
Sample C Male 97.1
Sample D Male 103.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 147.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 147.8
Samples: 4

Max nTPM: 162.3
Min nTPM: 136.4
Sample A Male 136.4
Sample B Male 140.4
Sample C Female 162.3
Sample D Female 152.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.0
1770 Antisense, RP_040526_02_G02, Mouse strain C57BL/6J (56 days, male) 7.0
1771 Antisense, RP_040526_02_G02, Mouse strain C57BL/6J (56 days, male) 2.8

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