MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:243.1 nTPM
HPA:243.1 nTPM
GTEx:109.9 nTPM
FANTOM5:58.9 Scaled Tags Per Million
Pig:117.6 nTPM
Mouse:128.7 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 243.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 210.4
2586 Male, age 75, left hemisphere 273.2
2828 Female, age 72, unknown 251.6
1827 Male, age 72, unknown 211.8
2666 Male, age 74, left hemisphere 209.6
1870 Female, age 42, unknown 203.8
2219 Male, age 76, both hemispheres 198.2
1833 Male, age 53, unknown 196.8
2411 Female, age 72, unknown 193.8
1830 Male, age 51, unknown 191.2
2019 Male, age 18, unknown 174.0
Dorsal raphe nucleus
nTPM: 231.7
2016 Female, age 72, unknown 251.9
2047 Male, age 72, unknown 242.3
2298 Female, age 72, unknown 237.0
1828 Male, age 53, unknown 231.7
2750 Male, age 76, both hemispheres 195.6
Inferior colliculus
nTPM: 214.3
1848 Female, age 42, unknown 225.7
2849 Male, age 72, unknown 222.8
1890 Male, age 53, unknown 207.1
2097 Female, age 72, unknown 201.6
Median raphe nucleus
nTPM: 206.4
2220 Male, age 76, midline 206.4
Pedunculopontine tegmental nucleus
nTPM: 188.8
1921 Female, age 85, both hemispheres 197.5
2334 Male, age 80, both hemispheres 195.6
2338 Male, age 61, both hemispheres 173.1
Periaquaductal grey, anterior
nTPM: 227.2
1795 Male, age 51, unknown 236.0
2502 Female, age 75, unknown 225.0
1947 Male, age 18, unknown 220.4
Periaquaductal grey, dorsal
nTPM: 243.1
1840 Male, age 53, unknown 268.0
2850 Male, age 76, both hemispheres 259.9
1831 Male, age 72, unknown 224.9
2464 Female, age 72, unknown 219.8
Periaquaductal grey, lateral
nTPM: 237.6
2053 Male, age 18, unknown 266.4
2140 Male, age 76, both hemispheres 253.7
2272 Male, age 74, both hemispheres 192.6
Pretectal area
nTPM: 210.6
2825 Male, age 18, unknown 239.8
2407 Male, age 75, both hemispheres 230.9
2316 Male, age 76, right hemisphere 216.0
2224 Female, age 72, unknown 214.5
2273 Male, age 74, both hemispheres 210.7
1816 Male, age 51, unknown 206.7
1815 Male, age 53, unknown 205.5
1944 Female, age 72, unknown 205.3
2667 Female, age 75, unknown 202.3
1817 Female, age 42, unknown 201.3
2007 Male, age 72, unknown 183.7
Red nucleus
nTPM: 200.2
2503 Female, age 72, unknown 212.9
2769 Male, age 72, unknown 207.5
2588 Male, age 74, left hemisphere 206.6
2227 Male, age 72, unknown 205.9
1954 Female, age 42, unknown 205.5
2584 Male, age 75, left hemisphere 201.7
1821 Female, age 72, unknown 200.5
1904 Male, age 53, unknown 199.3
2725 Female, age 75, unknown 198.4
1865 Male, age 51, unknown 195.5
2823 Male, age 76, right hemisphere 192.0
2785 Male, age 18, unknown 177.1
Substantia nigra
nTPM: 208.7
2699 Male, age 18, unknown 246.5
1916 Female, age 42, unknown 219.7
2590 Female, age 75, unknown 219.0
2583 Male, age 75, right hemisphere 218.2
1851 Male, age 51, unknown 209.3
2665 Male, age 74, both hemispheres 208.2
1889 Female, age 72, unknown 197.0
2241 Male, age 72, unknown 192.8
1941 Male, age 53, unknown 191.7
2409 Female, age 72, unknown 184.9
Superior colliculus
nTPM: 225.2
2664 Male, age 75, both hemispheres 307.7
1995 Male, age 72, unknown 248.0
1796 Male, age 53, unknown 225.6
1839 Male, age 51, unknown 220.4
2261 Male, age 18, unknown 219.9
2668 Female, age 75, unknown 219.2
2087 Female, age 72, unknown 211.4
1913 Female, age 42, unknown 210.2
2587 Male, age 74, left hemisphere 205.6
1895 Male, age 76, right hemisphere 184.0
Ventral tegmental area
nTPM: 212.3
1942 Male, age 51, unknown 229.1
2021 Male, age 53, unknown 229.1
1915 Female, age 42, unknown 215.0
2410 Female, age 72, unknown 203.6
2223 Female, age 72, unknown 198.6
2218 Male, age 76, both hemispheres 198.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 109.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.9
Samples: 139

Max nTPM: 349.2
Min nTPM: 8.8
Std nTPM: 59.1
Median nTPM: 100.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 349.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 266.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 249.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 249.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 243.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 233.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 232.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 221.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 220.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 210.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 203.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.9
FF:10158-103A5 76 years, female 58.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 117.6
Pig sample Sample description nTPM
Midbrain
nTPM: 115.5
Samples: 4

Max nTPM: 150.4
Min nTPM: 81.2
Sample A Female 150.4
Sample B Female 122.9
Sample C Male 107.5
Sample D Male 81.2
Periaqueductal gray
nTPM: 117.6
Samples: 3

Max nTPM: 134.0
Min nTPM: 103.4
Sample B Female 134.0
Sample C Male 115.4
Sample D Male 103.4
Substantia nigra
nTPM: 115.9
Samples: 4

Max nTPM: 130.0
Min nTPM: 98.3
Sample A Female 130.0
Sample B Female 98.3
Sample C Male 109.7
Sample D Male 125.4
Superior colliculi
nTPM: 99.5
Samples: 4

Max nTPM: 116.6
Min nTPM: 56.0
Sample A Female 115.2
Sample B Female 56.0
Sample C Male 110.2
Sample D Male 116.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.7
Samples: 4

Max nTPM: 140.7
Min nTPM: 118.2
Sample A Male 140.7
Sample B Male 124.0
Sample C Female 118.2
Sample D Female 131.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
1770 Antisense, RP_040526_02_G02, Mouse strain C57BL/6J (56 days, male) 3.0
1771 Antisense, RP_040526_02_G02, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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