PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.2 nTPM
HPA:43.2 nTPM
FANTOM5:47.9 Scaled Tags Per Million
Pig:94.1 nTPM
Mouse:70.5 nTPM
Allen mouse:1.1 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 43.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 29.4
1984 Male, age 76, both hemispheres 34.0
2188 Female, age 91, both hemispheres 29.6
2301 Female, age 85, both hemispheres 29.6
2090 Male, age 80, both hemispheres 24.2
Area postrema
nTPM: 42.9
2799 Male, age 61, both hemispheres 59.2
2306 Male, age 80, both hemispheres 37.4
2054 Male, age 76, both hemispheres 32.2
Cuneate nuclei
nTPM: 22.3
2381 Male, age 80, both hemispheres 25.6
2376 Male, age 61, both hemispheres 23.3
2131 Male, age 76, both hemispheres 17.8
Dorsal cochlear nucleus
nTPM: 33.3
2802 Male, age 74, right hemisphere 47.5
2378 Male, age 80, both hemispheres 33.3
2370 Male, age 61, both hemispheres 30.9
2187 Female, age 91, both hemispheres 28.4
2058 Male, age 76, both hemispheres 26.5
Dorsal medullary reticular nucleus
nTPM: 25.6
2040 Female, age 85, both hemispheres 32.0
2373 Male, age 61, both hemispheres 25.2
2088 Male, age 76, both hemispheres 19.7
Dorsal motor vagal complex
nTPM: 30.0
2797 Male, age 61, both hemispheres 57.2
2185 Male, age 76, both hemispheres 33.2
2643 Male, age 74, both hemispheres 29.9
2000 Male, age 74, unknown 29.8
2813 Female, age 72, unknown 27.7
2133 Female, age 91, both hemispheres 22.6
2807 Female, age 85, both hemispheres 20.1
2844 Male, age 55, unknown 19.5
Dorsal tegmental nucleus
nTPM: 33.8
2083 Male, age 80, both hemispheres 41.7
1936 Male, age 76, left hemisphere 38.7
2326 Male, age 74, both hemispheres 37.6
2358 Male, age 61, both hemispheres 17.4
Dorsolateral tegmental area
nTPM: 31.1
2654 Male, age 80, both hemispheres 42.5
2751 Female, age 85, both hemispheres 38.3
2360 Male, age 74, both hemispheres 31.4
2141 Male, age 76, both hemispheres 29.9
2337 Male, age 61, both hemispheres 13.4
Gigantocellular reticular nuclei, medullary
nTPM: 28.2
2314 Male, age 61, both hemispheres 38.7
1876 Female, age 85, both hemispheres 34.3
2387 Female, age 91, both hemispheres 30.7
2022 Male, age 76, right hemisphere 28.5
2310 Male, age 80, both hemispheres 23.4
2462 Male, age 74, both hemispheres 13.4
Gigantocellular reticular nuclei, pars
nTPM: 26.0
2084 Female, age 85, both hemispheres 31.3
2336 Male, age 61, both hemispheres 26.3
2168 Male, age 76, both hemispheres 24.7
2330 Male, age 80, both hemispheres 23.9
2706 Male, age 80, both hemispheres 23.5
Inferior olive
nTPM: 34.4
2085 Female, age 85, both hemispheres 42.4
2563 Male, age 74, both hemispheres 33.7
2178 Male, age 61, both hemispheres 33.3
2379 Male, age 80, both hemispheres 32.0
2628 Female, age 91, both hemispheres 30.4
Kolliker-Fuse nucleus
nTPM: 40.8
2315 Male, age 76, right hemisphere 65.7
2163 Male, age 80, both hemispheres 32.4
2793 Female, age 91, left hemisphere 24.5
Lateral lemniscal nuclei
nTPM: 20.5
2169 Male, age 76, both hemispheres 30.1
2036 Male, age 80, both hemispheres 22.4
2320 Female, age 91, left hemisphere 18.5
2746 Female, age 85, left hemisphere 17.8
2453 Male, age 74, right hemisphere 13.7
Lateral medullary reticular nucleus
nTPM: 31.1
2044 Male, age 76, both hemispheres 35.8
2804 Female, age 91, both hemispheres 35.2
2374 Male, age 61, both hemispheres 33.9
2190 Female, age 85, both hemispheres 31.5
2305 Male, age 74, both hemispheres 25.8
2852 Male, age 80, both hemispheres 24.5
Lateral parabrachial nucleus
nTPM: 34.7
2792 Male, age 76, both hemispheres 51.1
2013 Male, age 80, both hemispheres 34.8
2139 Female, age 85, right hemisphere 32.2
2790 Male, age 61, both hemispheres 20.9
Lateral vestibular nucleus
nTPM: 31.1
2311 Male, age 80, both hemispheres 31.4
2184 Male, age 76, both hemispheres 30.8
Locus coeruleus
nTPM: 26.1
2788 Male, age 74, unknown 39.1
2720 Male, age 74, both hemispheres 30.5
2014 Male, age 55, unknown 26.1
2317 Female, age 72, unknown 23.2
2123 Female, age 91, both hemispheres 22.7
1980 Male, age 76, both hemispheres 21.6
2162 Male, age 80, both hemispheres 19.2
Medial olivary nucleus
nTPM: 43.2
2138 Female, age 91, both hemispheres 56.4
1962 Male, age 76, both hemispheres 44.0
1943 Male, age 61, both hemispheres 39.4
2851 Male, age 80, both hemispheres 32.9
Medial parabrachial nucleus
nTPM: 30.5
2463 Female, age 85, right hemisphere 34.8
2854 Male, age 80, both hemispheres 33.6
2786 Male, age 76, both hemispheres 31.8
2170 Female, age 91, both hemispheres 27.2
2156 Male, age 61, both hemispheres 25.2
Medial periolivary nuclei
nTPM: 24.8
2063 Male, age 76, both hemispheres 35.3
2171 Female, age 85, both hemispheres 25.7
2081 Male, age 80, both hemispheres 23.2
2791 Male, age 74, right hemisphere 20.6
2458 Female, age 91, both hemispheres 19.0
Medial vestibular nucleus
nTPM: 33.4
2803 Female, age 91, both hemispheres 41.7
2093 Male, age 80, both hemispheres 34.3
2743 Female, age 85, both hemispheres 33.3
2624 Male, age 61, both hemispheres 31.6
2134 Male, age 76, both hemispheres 30.4
2801 Male, age 74, both hemispheres 28.9
Motor facial nucleus
nTPM: 24.9
2062 Male, age 76, both hemispheres 32.3
2795 Female, age 91, both hemispheres 28.9
2697 Female, age 85, both hemispheres 26.7
2327 Male, age 80, both hemispheres 23.9
2126 Male, age 61, both hemispheres 21.6
2365 Male, age 74, right hemisphere 15.9
Motor hypoglossal nucleus
nTPM: 25.1
2461 Male, age 61, both hemispheres 33.5
2125 Female, age 91, both hemispheres 30.0
2132 Female, age 85, both hemispheres 24.0
2277 Male, age 76, both hemispheres 20.9
2182 Male, age 80, both hemispheres 17.3
Motor trigeminal nucleus
nTPM: 21.5
2309 Male, age 76, both hemispheres 33.6
2335 Male, age 61, both hemispheres 20.5
2560 Male, age 74, both hemispheres 18.1
2321 Female, age 91, both hemispheres 18.0
2079 Male, age 80, both hemispheres 17.2
Nuclei of the trapezoid body
nTPM: 26.1
1983 Male, age 76, both hemispheres 33.7
2166 Male, age 80, both hemispheres 31.7
2159 Male, age 61, both hemispheres 22.7
2368 Female, age 91, both hemispheres 21.3
2735 Female, age 85, both hemispheres 21.0
Nucleus ambiguus
nTPM: 23.1
2071 Male, age 76, both hemispheres 46.3
2096 Female, age 85, both hemispheres 0.0
Nucleus cuneatus
nTPM: 28.2
2380 Male, age 80, both hemispheres 33.0
2805 Female, age 91, both hemispheres 31.2
2808 Female, age 85, both hemispheres 28.1
2562 Male, age 61, both hemispheres 27.0
2564 Male, age 74, both hemispheres 25.8
2100 Male, age 76, both hemispheres 24.0
Nucleus gracilis
nTPM: 30.9
2299 Female, age 85, both hemispheres 32.1
2382 Male, age 80, both hemispheres 30.7
2627 Male, age 74, both hemispheres 30.1
Nucleus raphe magnus
nTPM: 22.8
2051 Male, age 76, both hemispheres 29.2
2328 Male, age 80, both hemispheres 29.0
2160 Male, age 61, both hemispheres 24.6
2459 Female, age 91, both hemispheres 19.4
2172 Female, age 85, both hemispheres 18.5
2455 Male, age 74, both hemispheres 16.3
Nucleus raphe obscurus
nTPM: 36.5
2142 Male, age 76, midline 45.2
2845 Female, age 85, midline 38.1
2800 Male, age 61, midline 26.3
Nucleus raphe pallidus
nTPM: 32.2
2145 Male, age 76, midline 41.0
2183 Male, age 80, midline 28.1
1924 Male, age 61, midline 27.7
Nucleus tractus solitarii
nTPM: 37.3
2144 Female, age 91, right hemisphere 99.6
2191 Female, age 85, both hemispheres 27.5
2656 Male, age 76, both hemispheres 16.4
2307 Male, age 80, both hemispheres 5.8
Paramedian reticular nucleus
nTPM: 35.1
2052 Male, age 76, both hemispheres 49.1
2313 Male, age 61, both hemispheres 31.5
2050 Female, age 85, both hemispheres 30.1
2057 Male, age 80, both hemispheres 29.7
Parvicellular reticular nuclei
nTPM: 26.0
2095 Male, age 76, both hemispheres 36.9
2119 Male, age 80, both hemispheres 30.8
2558 Male, age 74, both hemispheres 10.2
Parvicellular reticular nuclei, medullary
nTPM: 27.6
2189 Female, age 91, both hemispheres 30.7
2181 Male, age 80, left hemisphere 29.7
2091 Female, age 85, both hemispheres 22.5
Peritrigeminal nucleus
nTPM: 27.9
2136 Male, age 76, both hemispheres 36.1
2067 Female, age 85, both hemispheres 24.6
2179 Male, age 61, both hemispheres 22.9
Pontine nuclei
nTPM: 23.8
1863 Male, age 55, unknown 32.1
1968 Male, age 76, left hemisphere 30.8
2109 Female, age 72, unknown 23.7
2454 Male, age 74, left hemisphere 23.2
2319 Female, age 91, both hemispheres 22.4
2727 Male, age 61, right hemisphere 20.2
2787 Female, age 85, both hemispheres 19.4
2115 Male, age 80, left hemisphere 18.9
Pontine raphe nucleus
nTPM: 31.6
2853 Male, age 76, midline 35.5
2122 Female, age 85, midline 27.7
Posteroventral cochlear nucleus
nTPM: 32.7
2341 Male, age 80, both hemispheres 45.7
2371 Male, age 61, both hemispheres 34.1
2135 Female, age 91, both hemispheres 28.6
2070 Male, age 76, both hemispheres 28.0
2752 Female, age 85, both hemispheres 27.3
Prepositus hypoglossal nucleus
nTPM: 31.4
2855 Female, age 85, right hemisphere 38.5
2086 Male, age 80, both hemispheres 24.3
Principal sensory trigeminal nucleus
nTPM: 23.1
2324 Male, age 76, both hemispheres 33.1
2008 Male, age 80, left hemisphere 20.9
2367 Female, age 91, left hemisphere 20.2
2158 Male, age 61, both hemispheres 18.3
Reticular pontine nucleus, caudal
nTPM: 26.0
2092 Male, age 76, both hemispheres 34.5
2457 Female, age 91, both hemispheres 25.1
2559 Male, age 74, both hemispheres 24.8
2332 Male, age 80, right hemisphere 19.6
Reticular pontine nucleus, oral
nTPM: 32.3
1939 Male, age 80, both hemispheres 43.5
2167 Male, age 76, both hemispheres 39.7
2012 Female, age 85, both hemispheres 28.0
2366 Female, age 91, both hemispheres 28.0
2361 Male, age 74, both hemispheres 22.3
Reticulotegmental nucleus
nTPM: 30.1
2322 Female, age 91, both hemispheres 32.3
2333 Male, age 80, both hemispheres 29.8
2452 Male, age 74, both hemispheres 29.7
2325 Male, age 76, both hemispheres 28.6
Spinal trigeminal nucleus, caudal
nTPM: 24.7
2390 Female, age 91, both hemispheres 28.9
2312 Male, age 61, both hemispheres 27.9
2447 Male, age 76, both hemispheres 23.7
2308 Male, age 80, both hemispheres 22.8
2642 Male, age 74, both hemispheres 20.3
Spinal trigeminal nucleus, interpolar
nTPM: 28.9
2625 Male, age 61, both hemispheres 32.4
2066 Male, age 76, right hemisphere 30.4
2389 Female, age 91, both hemispheres 29.9
2033 Male, age 80, both hemispheres 27.9
2386 Female, age 85, both hemispheres 24.1
Spinal trigeminal nucleus, oral
nTPM: 28.2
1978 Male, age 76, both hemispheres 29.8
2737 Female, age 85, both hemispheres 27.9
2164 Male, age 80, both hemispheres 27.0
Spinal vestibular nucleus
nTPM: 34.6
2806 Female, age 85, both hemispheres 43.1
2384 Male, age 74, both hemispheres 40.0
2748 Male, age 76, both hemispheres 33.2
2796 Male, age 61, both hemispheres 32.1
2186 Female, age 91, both hemispheres 32.0
2780 Male, age 80, both hemispheres 27.2
Subcoeruleus area
nTPM: 31.3
2369 Female, age 85, left hemisphere 40.7
1958 Male, age 80, both hemispheres 37.1
2451 Male, age 74, both hemispheres 35.7
2323 Female, age 91, left hemisphere 22.0
2089 Male, age 76, left hemisphere 21.3
Superior olive
nTPM: 24.6
2020 Male, age 76, both hemispheres 34.6
1875 Female, age 85, both hemispheres 28.2
2329 Male, age 80, right hemisphere 24.2
2561 Female, age 91, both hemispheres 18.1
2364 Male, age 74, right hemisphere 17.9
Superior vestibular nucleus
nTPM: 41.2
2383 Male, age 74, both hemispheres 56.9
2015 Male, age 80, both hemispheres 34.9
2061 Male, age 76, both hemispheres 31.6
Ventral medullary reticular nucleus
nTPM: 25.7
2372 Male, age 61, both hemispheres 30.8
2060 Male, age 76, both hemispheres 20.6
Ventral periolivary nuclei
nTPM: 24.9
2023 Male, age 76, both hemispheres 35.2
2165 Male, age 80, both hemispheres 28.9
2130 Female, age 85, both hemispheres 23.8
2794 Female, age 91, left hemisphere 11.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 28.5
1986 Male, age 76, both hemispheres 32.9
2302 Female, age 91, both hemispheres 31.9
2180 Male, age 61, both hemispheres 28.6
2741 Female, age 85, both hemispheres 24.9
2118 Male, age 80, both hemispheres 24.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 25.5
1959 Male, age 76, both hemispheres 32.0
2840 Female, age 85, both hemispheres 29.7
2161 Male, age 80, both hemispheres 29.0
2359 Male, age 61, both hemispheres 26.0
2456 Female, age 91, both hemispheres 21.6
2449 Male, age 74, both hemispheres 15.0

PONS AND MEDULLA - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 47.9
FF:10165-103B3 76 years, female 52.7
FF:10182-103D2 60 years, female 43.1
Medulla oblongata
Scaled Tags Per Million: 36.0
FF:10155-103A2 76 years, female 54.6
FF:10174-103C3 60 years, female 36.8
FF:10038-101F2 18-64 years, mixed 16.5
Pons
Scaled Tags Per Million: 44.9
FF:10033-101E6 18-54 years, mixed 44.9

PONS AND MEDULLA - Pig RNA-seqi
Average nTPM 94.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 75.0
Samples: 4

Max nTPM: 80.4
Min nTPM: 66.8
Sample A Female 77.4
Sample B Female 75.5
Sample C Male 66.8
Sample D Male 80.4
Pons
nTPM: 94.1
Samples: 4

Max nTPM: 115.6
Min nTPM: 76.6
Sample A Female 115.6
Sample B Female 76.6
Sample C Male 95.0
Sample D Male 89.1

PONS AND MEDULLA - Mouse RNA-seqi
Average nTPM 70.5
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 70.5
Samples: 4

Max nTPM: 74.0
Min nTPM: 61.6
Sample A Male 72.7
Sample B Male 73.5
Sample C Female 61.6
Sample D Female 74.0

PONS AND MEDULLA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 1.1
113 Antisense, RP_Baylor_102635, Mouse strain C57BL/6J (56 days, male) 2.3
114 Antisense, RP_Baylor_102635, Mouse strain C57BL/6J (56 days, male) 0.1
115 Sense, RPS_Baylor_36953, Mouse strain C57BL/6J (56 days, male) 0.0
Pons
Expression energy: 1.1
113 Antisense, RP_Baylor_102635, Mouse strain C57BL/6J (56 days, male) 2.2
114 Antisense, RP_Baylor_102635, Mouse strain C57BL/6J (56 days, male) 0.2
115 Sense, RPS_Baylor_36953, Mouse strain C57BL/6J (56 days, male) 0.0

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