MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:25.6 nTPM
HPA:25.6 nTPM
GTEx:48.3 nTPM
FANTOM5:43.6 Scaled Tags Per Million
Pig:21.2 nTPM
Mouse:27.7 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.3
2411 Female, age 72, unknown 26.7
2666 Male, age 74, left hemisphere 25.9
1833 Male, age 53, unknown 25.6
2019 Male, age 18, unknown 25.5
1827 Male, age 72, unknown 25.3
1830 Male, age 51, unknown 25.3
2828 Female, age 72, unknown 25.2
1870 Female, age 42, unknown 24.9
2586 Male, age 75, left hemisphere 24.2
2219 Male, age 76, both hemispheres 23.8
Dorsal raphe nucleus
nTPM: 24.7
2047 Male, age 72, unknown 25.7
1828 Male, age 53, unknown 24.8
2298 Female, age 72, unknown 24.4
2750 Male, age 76, both hemispheres 24.4
2016 Female, age 72, unknown 24.2
Inferior colliculus
nTPM: 24.7
2097 Female, age 72, unknown 25.5
1848 Female, age 42, unknown 24.9
1890 Male, age 53, unknown 24.5
2849 Male, age 72, unknown 23.8
Median raphe nucleus
nTPM: 24.2
2220 Male, age 76, midline 24.2
Pedunculopontine tegmental nucleus
nTPM: 25.5
2338 Male, age 61, both hemispheres 26.0
1921 Female, age 85, both hemispheres 25.2
2334 Male, age 80, both hemispheres 25.2
Periaquaductal grey, anterior
nTPM: 24.7
1947 Male, age 18, unknown 25.3
2502 Female, age 75, unknown 24.9
1795 Male, age 51, unknown 23.8
Periaquaductal grey, dorsal
nTPM: 24.5
2850 Male, age 76, both hemispheres 25.2
1840 Male, age 53, unknown 24.6
1831 Male, age 72, unknown 24.3
2464 Female, age 72, unknown 23.9
Periaquaductal grey, lateral
nTPM: 23.9
2272 Male, age 74, both hemispheres 24.7
2053 Male, age 18, unknown 24.2
2140 Male, age 76, both hemispheres 22.8
Pretectal area
nTPM: 25.3
2007 Male, age 72, unknown 26.8
2273 Male, age 74, both hemispheres 26.7
1816 Male, age 51, unknown 26.2
1815 Male, age 53, unknown 26.1
1944 Female, age 72, unknown 26.1
1817 Female, age 42, unknown 25.3
2825 Male, age 18, unknown 24.7
2667 Female, age 75, unknown 24.4
2316 Male, age 76, right hemisphere 24.2
2407 Male, age 75, both hemispheres 24.1
2224 Female, age 72, unknown 23.5
Red nucleus
nTPM: 24.7
2725 Female, age 75, unknown 26.1
1954 Female, age 42, unknown 25.7
2769 Male, age 72, unknown 25.7
2588 Male, age 74, left hemisphere 25.6
2503 Female, age 72, unknown 24.8
2823 Male, age 76, right hemisphere 24.8
1821 Female, age 72, unknown 24.6
2584 Male, age 75, left hemisphere 24.3
2785 Male, age 18, unknown 24.3
1865 Male, age 51, unknown 24.1
1904 Male, age 53, unknown 23.8
2227 Male, age 72, unknown 22.8
Substantia nigra
nTPM: 25.6
1851 Male, age 51, unknown 27.1
2409 Female, age 72, unknown 27.0
1889 Female, age 72, unknown 25.9
1916 Female, age 42, unknown 25.9
1941 Male, age 53, unknown 25.8
2665 Male, age 74, both hemispheres 25.7
2241 Male, age 72, unknown 25.4
2699 Male, age 18, unknown 24.7
2590 Female, age 75, unknown 24.6
2583 Male, age 75, right hemisphere 24.0
Superior colliculus
nTPM: 24.5
2087 Female, age 72, unknown 25.9
1895 Male, age 76, right hemisphere 25.4
2261 Male, age 18, unknown 24.9
2668 Female, age 75, unknown 24.7
1796 Male, age 53, unknown 24.5
1995 Male, age 72, unknown 24.5
2664 Male, age 75, both hemispheres 24.1
1913 Female, age 42, unknown 24.0
2587 Male, age 74, left hemisphere 23.7
1839 Male, age 51, unknown 23.5
Ventral tegmental area
nTPM: 24.3
2410 Female, age 72, unknown 26.0
1915 Female, age 42, unknown 25.0
1942 Male, age 51, unknown 24.5
2021 Male, age 53, unknown 23.8
2223 Female, age 72, unknown 23.5
2218 Male, age 76, both hemispheres 23.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.3
Samples: 139

Max nTPM: 95.1
Min nTPM: 33.3
Std nTPM: 8.5
Median nTPM: 47.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 95.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 74.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 73.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 67.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 66.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 64.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 63.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 62.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 61.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 60.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.6
FF:10158-103A5 76 years, female 43.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.2
Pig sample Sample description nTPM
Midbrain
nTPM: 19.4
Samples: 4

Max nTPM: 20.6
Min nTPM: 18.2
Sample A Female 18.2
Sample B Female 18.5
Sample C Male 20.2
Sample D Male 20.6
Periaqueductal gray
nTPM: 17.6
Samples: 3

Max nTPM: 18.3
Min nTPM: 16.9
Sample B Female 17.5
Sample C Male 18.3
Sample D Male 16.9
Substantia nigra
nTPM: 18.4
Samples: 4

Max nTPM: 21.0
Min nTPM: 15.5
Sample A Female 20.8
Sample B Female 15.5
Sample C Male 21.0
Sample D Male 16.4
Superior colliculi
nTPM: 21.2
Samples: 4

Max nTPM: 24.0
Min nTPM: 20.1
Sample A Female 20.5
Sample B Female 20.1
Sample C Male 24.0
Sample D Male 20.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.7
Samples: 4

Max nTPM: 28.9
Min nTPM: 25.8
Sample A Male 28.9
Sample B Male 25.8
Sample C Female 28.3
Sample D Female 27.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
100144758 Antisense, RP_110421_03_E05, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.