BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:67.3 nTPM
HPA:67.3 nTPM
GTEx:91.3 nTPM
FANTOM5:91.8 Scaled Tags Per Million
Pig:70.7 nTPM
Mouse:198.0 nTPM
Allen mouse:14.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA026866
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 67.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 50.0
2846 Female, age 79, unknown 55.8
2288 Male, age 75, left hemisphere 55.6
1781 Male, age 74, unknown 53.9
2290 Female, age 72, unknown 52.4
1857 Female, age 85, left hemisphere 51.9
1854 Male, age 80, left hemisphere 50.3
2289 Male, age 61, right hemisphere 42.9
2481 Female, age 94, left hemisphere 37.2
Claustrum
nTPM: 56.5
2568 Male, age 61, both hemispheres 59.4
2491 Male, age 75, both hemispheres 59.1
2292 Female, age 85, both hemispheres 57.7
2645 Female, age 72, unknown 57.5
2392 Female, age 94, both hemispheres 56.4
2196 Female, age 79, unknown 56.2
2198 Male, age 80, both hemispheres 55.7
2284 Female, age 91, both hemispheres 55.1
1956 Male, age 74, unknown 51.3
Globus pallidus, externus
nTPM: 65.5
2395 Male, age 75, both hemispheres 71.4
2772 Female, age 79, unknown 70.2
2567 Female, age 72, unknown 64.7
2646 Male, age 61, right hemisphere 61.2
1996 Male, age 80, right hemisphere 60.1
Globus pallidus, internus
nTPM: 67.3
2778 Female, age 91, both hemispheres 81.3
2287 Male, age 75, right hemisphere 76.3
2111 Female, age 85, right hemisphere 72.2
2566 Female, age 72, unknown 68.6
1818 Male, age 74, unknown 63.4
2037 Male, age 80, right hemisphere 58.4
2483 Female, age 94, right hemisphere 51.0
Nucleus accumbens
nTPM: 55.8
1806 Female, age 85, left hemisphere 60.5
1783 Male, age 74, unknown 60.0
1856 Female, age 91, right hemisphere 59.0
2698 Female, age 72, unknown 54.8
2286 Male, age 75, left hemisphere 54.4
2824 Male, age 61, right hemisphere 54.4
2391 Female, age 94, left hemisphere 53.2
2732 Male, age 80, right hemisphere 50.5
Nucleus basalis of Meynert
nTPM: 53.5
2569 Male, age 61, both hemispheres 57.1
2821 Male, age 75, both hemispheres 54.1
2484 Female, age 94, left hemisphere 52.6
2393 Male, age 80, right hemisphere 50.1
Nucleus of the diagonal band
nTPM: 51.7
1812 Female, age 91, both hemispheres 56.3
2195 Female, age 85, both hemispheres 51.8
2775 Male, age 80, right hemisphere 51.5
2029 Male, age 61, right hemisphere 50.7
1979 Male, age 74, unknown 48.3
Olfactory tubercle
nTPM: 51.5
1998 Female, age 91, both hemispheres 55.3
2487 Female, age 94, left hemisphere 54.7
1846 Male, age 80, right hemisphere 48.7
2856 Male, age 75, right hemisphere 47.4
Putamen
nTPM: 53.5
1937 Female, age 91, right hemisphere 61.2
2647 Male, age 75, left hemisphere 56.3
2466 Female, age 79, unknown 55.6
1829 Male, age 74, unknown 54.6
2489 Female, age 72, unknown 51.3
1838 Male, age 80, right hemisphere 51.2
2482 Female, age 94, left hemisphere 44.0
Septal nuclei
nTPM: 51.9
2394 Male, age 61, left hemisphere 58.3
1960 Male, age 74, unknown 56.6
2059 Female, age 85, both hemispheres 52.6
2031 Female, age 72, unknown 51.7
2009 Female, age 91, both hemispheres 49.3
2199 Male, age 80, right hemisphere 47.7
2629 Female, age 94, right hemisphere 46.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 91.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 80.1
Samples: 246

Max nTPM: 147.7
Min nTPM: 33.0
Std nTPM: 19.7
Median nTPM: 80.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 147.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 141.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 136.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 131.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 125.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 124.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 123.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 120.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 116.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 114.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 113.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 91.3
Samples: 246

Max nTPM: 188.1
Min nTPM: 32.5
Std nTPM: 20.8
Median nTPM: 90.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 188.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 157.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 148.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 143.7
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 135.7
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 134.6
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 126.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 124.5
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 124.4
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 123.8
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 123.5
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Brain - Putamen (basal ganglia)
Average nTPM: 87.8
Samples: 205

Max nTPM: 150.7
Min nTPM: 40.2
Std nTPM: 22.1
Median nTPM: 88.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 150.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 142.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 135.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 134.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 133.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 131.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 131.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 130.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 127.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 126.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 123.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 60.5
FF:10164-103B2 76 years, female 60.5
Globus pallidus
Scaled Tags Per Million: 77.8
FF:10161-103A8 76 years, female 78.4
FF:10175-103C4 60 years, female 77.3
Nucleus accumbens
Scaled Tags Per Million: 91.8
FF:10037-101F1 23-56 years, mixed 91.8
Putamen
Scaled Tags Per Million: 89.4
FF:10176-103C5 60 years, female 89.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 70.7
Pig sample Sample description nTPM
Caudate
nTPM: 62.7
Samples: 4

Max nTPM: 77.0
Min nTPM: 47.3
Sample A Female 47.3
Sample B Female 64.0
Sample C Male 77.0
Sample D Male 62.6
Putamen
nTPM: 70.7
Samples: 4

Max nTPM: 85.8
Min nTPM: 57.9
Sample A Female 67.2
Sample B Female 57.9
Sample C Male 85.8
Sample D Male 71.8
Septum
nTPM: 53.6
Samples: 4

Max nTPM: 58.2
Min nTPM: 44.0
Sample A Female 58.2
Sample B Female 54.7
Sample C Male 57.3
Sample D Male 44.0
Ventral pallidum
nTPM: 62.9
Samples: 4

Max nTPM: 74.6
Min nTPM: 51.2
Sample A Female 51.2
Sample B Female 66.1
Sample C Male 74.6
Sample D Male 59.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 198.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 198.0
Samples: 4

Max nTPM: 213.5
Min nTPM: 183.4
Sample A Male 213.5
Sample B Male 192.8
Sample C Female 183.4
Sample D Female 202.3
Septum
nTPM: 172.3
Samples: 4

Max nTPM: 196.3
Min nTPM: 158.5
Sample A Male 163.8
Sample B Male 196.3
Sample C Female 170.6
Sample D Female 158.5
Ventral forebrain
nTPM: 192.2
Samples: 4

Max nTPM: 202.2
Min nTPM: 184.4
Sample A Male 191.9
Sample B Male 184.4
Sample C Female 202.2
Sample D Female 190.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 14.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 14.3
70445532 Antisense, RP_050614_04_A08, Mouse strain C57BL/6J (56 days, male) 14.3
Pallidum
Expression energy: 12.8
70445532 Antisense, RP_050614_04_A08, Mouse strain C57BL/6J (56 days, male) 12.8

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The Human Protein Atlas

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