MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:54.7 nTPM
HPA:54.7 nTPM
GTEx:53.3 nTPM
FANTOM5:36.0 Scaled Tags Per Million
Pig:16.1 nTPM
Mouse:0.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.9
2586 Male, age 75, left hemisphere 54.1
1870 Female, age 42, unknown 51.3
1830 Male, age 51, unknown 50.6
2411 Female, age 72, unknown 49.5
2019 Male, age 18, unknown 49.0
2666 Male, age 74, left hemisphere 48.3
1833 Male, age 53, unknown 48.2
2828 Female, age 72, unknown 46.2
1827 Male, age 72, unknown 41.5
2219 Male, age 76, both hemispheres 40.7
Dorsal raphe nucleus
nTPM: 45.3
2750 Male, age 76, both hemispheres 55.1
2016 Female, age 72, unknown 45.9
2047 Male, age 72, unknown 44.1
1828 Male, age 53, unknown 42.6
2298 Female, age 72, unknown 38.6
Inferior colliculus
nTPM: 43.3
1848 Female, age 42, unknown 44.5
1890 Male, age 53, unknown 44.2
2849 Male, age 72, unknown 43.3
2097 Female, age 72, unknown 41.0
Median raphe nucleus
nTPM: 42.6
2220 Male, age 76, midline 42.6
Pedunculopontine tegmental nucleus
nTPM: 44.1
2334 Male, age 80, both hemispheres 45.4
1921 Female, age 85, both hemispheres 43.4
2338 Male, age 61, both hemispheres 43.4
Periaquaductal grey, anterior
nTPM: 44.2
2502 Female, age 75, unknown 46.2
1947 Male, age 18, unknown 45.5
1795 Male, age 51, unknown 40.9
Periaquaductal grey, dorsal
nTPM: 40.3
2464 Female, age 72, unknown 44.3
1840 Male, age 53, unknown 40.5
1831 Male, age 72, unknown 39.3
2850 Male, age 76, both hemispheres 37.1
Periaquaductal grey, lateral
nTPM: 40.4
2053 Male, age 18, unknown 42.4
2272 Male, age 74, both hemispheres 39.6
2140 Male, age 76, both hemispheres 39.0
Pretectal area
nTPM: 41.5
2316 Male, age 76, right hemisphere 46.6
1815 Male, age 53, unknown 43.8
2407 Male, age 75, both hemispheres 43.6
2007 Male, age 72, unknown 43.1
2825 Male, age 18, unknown 42.8
1817 Female, age 42, unknown 41.8
1816 Male, age 51, unknown 39.5
2224 Female, age 72, unknown 39.5
2273 Male, age 74, both hemispheres 39.1
1944 Female, age 72, unknown 38.5
2667 Female, age 75, unknown 38.1
Red nucleus
nTPM: 54.7
2588 Male, age 74, left hemisphere 62.8
2503 Female, age 72, unknown 59.3
2769 Male, age 72, unknown 58.0
1904 Male, age 53, unknown 57.5
2227 Male, age 72, unknown 57.1
1865 Male, age 51, unknown 54.3
2823 Male, age 76, right hemisphere 52.9
2785 Male, age 18, unknown 52.2
1821 Female, age 72, unknown 52.0
1954 Female, age 42, unknown 51.7
2584 Male, age 75, left hemisphere 49.5
2725 Female, age 75, unknown 49.5
Substantia nigra
nTPM: 44.9
2590 Female, age 75, unknown 48.4
2409 Female, age 72, unknown 47.4
2665 Male, age 74, both hemispheres 46.1
1851 Male, age 51, unknown 45.7
2583 Male, age 75, right hemisphere 45.4
1889 Female, age 72, unknown 44.4
2241 Male, age 72, unknown 44.0
1941 Male, age 53, unknown 42.9
2699 Male, age 18, unknown 42.8
1916 Female, age 42, unknown 41.5
Superior colliculus
nTPM: 44.9
1913 Female, age 42, unknown 48.7
2668 Female, age 75, unknown 47.3
1995 Male, age 72, unknown 47.0
1895 Male, age 76, right hemisphere 46.7
2587 Male, age 74, left hemisphere 46.5
1839 Male, age 51, unknown 45.9
2664 Male, age 75, both hemispheres 43.8
1796 Male, age 53, unknown 42.4
2261 Male, age 18, unknown 41.4
2087 Female, age 72, unknown 38.9
Ventral tegmental area
nTPM: 45.7
2223 Female, age 72, unknown 49.2
2410 Female, age 72, unknown 47.3
1942 Male, age 51, unknown 46.9
2021 Male, age 53, unknown 45.0
1915 Female, age 42, unknown 43.5
2218 Male, age 76, both hemispheres 42.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.3
Samples: 139

Max nTPM: 161.0
Min nTPM: 17.1
Std nTPM: 28.4
Median nTPM: 44.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 161.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 159.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 136.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 134.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 132.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 115.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 106.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 101.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 100.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 100.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 95.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.0
FF:10158-103A5 76 years, female 36.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.1
Pig sample Sample description nTPM
Midbrain
nTPM: 15.3
Samples: 4

Max nTPM: 21.1
Min nTPM: 11.3
Sample A Female 21.1
Sample B Female 15.2
Sample C Male 13.4
Sample D Male 11.3
Periaqueductal gray
nTPM: 15.5
Samples: 3

Max nTPM: 17.4
Min nTPM: 14.4
Sample B Female 14.6
Sample C Male 17.4
Sample D Male 14.4
Substantia nigra
nTPM: 16.1
Samples: 4

Max nTPM: 18.0
Min nTPM: 15.1
Sample A Female 18.0
Sample B Female 15.1
Sample C Male 16.2
Sample D Male 15.2
Superior colliculi
nTPM: 10.6
Samples: 4

Max nTPM: 12.7
Min nTPM: 7.1
Sample A Female 12.1
Sample B Female 7.1
Sample C Male 10.5
Sample D Male 12.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.0
Sample C Female 0.2
Sample D Female 0.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71381121 Antisense, RP_050510_02_D03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.