MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.3 nTPM
HPA:40.3 nTPM
GTEx:69.9 nTPM
FANTOM5:10.1 Scaled Tags Per Million
Pig:1.5 nTPM
Mouse:99.3 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.5
2219 Male, age 76, both hemispheres 39.5
2411 Female, age 72, unknown 38.1
2586 Male, age 75, left hemisphere 35.0
2666 Male, age 74, left hemisphere 34.6
2828 Female, age 72, unknown 34.4
1827 Male, age 72, unknown 34.3
1870 Female, age 42, unknown 32.7
1833 Male, age 53, unknown 31.9
1830 Male, age 51, unknown 29.5
2019 Male, age 18, unknown 25.0
Dorsal raphe nucleus
nTPM: 40.3
2298 Female, age 72, unknown 46.1
2047 Male, age 72, unknown 45.5
2750 Male, age 76, both hemispheres 41.0
2016 Female, age 72, unknown 35.0
1828 Male, age 53, unknown 34.1
Inferior colliculus
nTPM: 31.9
1890 Male, age 53, unknown 33.1
2849 Male, age 72, unknown 33.1
1848 Female, age 42, unknown 32.1
2097 Female, age 72, unknown 29.4
Median raphe nucleus
nTPM: 38.5
2220 Male, age 76, midline 38.5
Pedunculopontine tegmental nucleus
nTPM: 33.5
1921 Female, age 85, both hemispheres 39.2
2334 Male, age 80, both hemispheres 36.0
2338 Male, age 61, both hemispheres 25.3
Periaquaductal grey, anterior
nTPM: 37.5
1795 Male, age 51, unknown 39.1
1947 Male, age 18, unknown 37.3
2502 Female, age 75, unknown 36.1
Periaquaductal grey, dorsal
nTPM: 39.2
1840 Male, age 53, unknown 47.6
2850 Male, age 76, both hemispheres 38.8
2464 Female, age 72, unknown 37.1
1831 Male, age 72, unknown 33.5
Periaquaductal grey, lateral
nTPM: 36.2
2053 Male, age 18, unknown 40.1
2140 Male, age 76, both hemispheres 36.6
2272 Male, age 74, both hemispheres 31.9
Pretectal area
nTPM: 32.4
2224 Female, age 72, unknown 40.5
2825 Male, age 18, unknown 37.5
2316 Male, age 76, right hemisphere 34.0
1944 Female, age 72, unknown 33.0
1817 Female, age 42, unknown 31.2
1816 Male, age 51, unknown 31.0
2273 Male, age 74, both hemispheres 30.6
1815 Male, age 53, unknown 30.4
2667 Female, age 75, unknown 30.4
2407 Male, age 75, both hemispheres 29.4
2007 Male, age 72, unknown 27.8
Red nucleus
nTPM: 29.4
2725 Female, age 75, unknown 33.1
2769 Male, age 72, unknown 30.5
1904 Male, age 53, unknown 30.4
2227 Male, age 72, unknown 30.1
2588 Male, age 74, left hemisphere 29.9
2503 Female, age 72, unknown 29.8
1954 Female, age 42, unknown 29.7
2823 Male, age 76, right hemisphere 29.2
1821 Female, age 72, unknown 28.4
1865 Male, age 51, unknown 28.3
2584 Male, age 75, left hemisphere 27.4
2785 Male, age 18, unknown 26.4
Substantia nigra
nTPM: 39.4
2699 Male, age 18, unknown 49.3
2665 Male, age 74, both hemispheres 46.3
1851 Male, age 51, unknown 42.7
1916 Female, age 42, unknown 41.2
2241 Male, age 72, unknown 39.8
2409 Female, age 72, unknown 37.9
2590 Female, age 75, unknown 37.7
1941 Male, age 53, unknown 35.6
1889 Female, age 72, unknown 33.8
2583 Male, age 75, right hemisphere 29.8
Superior colliculus
nTPM: 32.9
2261 Male, age 18, unknown 34.4
1796 Male, age 53, unknown 34.3
2087 Female, age 72, unknown 34.2
2664 Male, age 75, both hemispheres 33.8
1995 Male, age 72, unknown 33.0
2587 Male, age 74, left hemisphere 32.9
2668 Female, age 75, unknown 32.1
1913 Female, age 42, unknown 31.7
1839 Male, age 51, unknown 31.3
1895 Male, age 76, right hemisphere 31.0
Ventral tegmental area
nTPM: 38.2
1942 Male, age 51, unknown 44.1
2021 Male, age 53, unknown 38.3
2218 Male, age 76, both hemispheres 38.2
2410 Female, age 72, unknown 37.0
1915 Female, age 42, unknown 36.9
2223 Female, age 72, unknown 34.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.9
Samples: 139

Max nTPM: 307.8
Min nTPM: 5.7
Std nTPM: 48.6
Median nTPM: 59.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 307.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 260.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 260.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 228.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 212.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 183.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 169.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 140.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 137.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 136.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 136.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.1
FF:10158-103A5 76 years, female 10.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.5
Pig sample Sample description nTPM
Midbrain
nTPM: 0.9
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 1.3
Sample C Male 1.0
Sample D Male 0.9
Periaqueductal gray
nTPM: 1.5
Samples: 3

Max nTPM: 1.6
Min nTPM: 1.5
Sample B Female 1.5
Sample C Male 1.6
Sample D Male 1.5
Substantia nigra
nTPM: 1.1
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.9
Sample A Female 1.2
Sample B Female 1.2
Sample C Male 1.2
Sample D Male 0.9
Superior colliculi
nTPM: 0.8
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.7
Sample A Female 0.9
Sample B Female 0.7
Sample C Male 0.8
Sample D Male 0.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 99.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.3
Samples: 4

Max nTPM: 106.6
Min nTPM: 90.3
Sample A Male 105.0
Sample B Male 95.2
Sample C Female 90.3
Sample D Female 106.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
112648182 Antisense, RP_080912_05_A07, Mouse strain C57BL/6J (56 days, male) 0.9
1475 Antisense, RP_Baylor_103226, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.