We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SNTA1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SNTA1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:162.7 nTPM
HPA:162.7 nTPM
GTEx:139.2 nTPM
FANTOM5:70.7 Scaled Tags Per Million
Mouse:26.3 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 162.7
Sample id Sample description nTPM
Amygdala
nTPM: 162.4
2695 Female, age 67, right hemisphere 172.5
2514 Male, age 75, right hemisphere 164.9
2517 Female, age 94, left hemisphere 160.6
1987 Female, age 91, left hemisphere 160.3
2814 Male, age 76, right hemisphere 153.6
Basal amygdala
nTPM: 160.6
2609 Male, age 75, right hemisphere 205.4
2243 Female, age 91, right hemisphere 162.9
2110 Male, age 80, left hemisphere 157.0
1955 Male, age 76, both hemispheres 149.8
2685 Female, age 94, left hemisphere 149.7
2827 Female, age 67, right hemisphere 138.8
Central amygdala
nTPM: 161.8
2515 Male, age 75, right hemisphere 172.8
1905 Male, age 76, both hemispheres 167.0
2826 Female, age 94, left hemisphere 162.9
2239 Male, age 80, left hemisphere 154.2
2701 Female, age 91, right hemisphere 152.3
Corticomedial amygdala
nTPM: 155.3
2428 Male, age 75, right hemisphere 185.6
2829 Male, age 80, left hemisphere 163.2
2242 Female, age 91, right hemisphere 152.2
2429 Female, age 94, left hemisphere 148.7
2535 Female, age 67, right hemisphere 142.6
2240 Male, age 76, both hemispheres 139.4
Lateral amygdala
nTPM: 162.7
2516 Male, age 75, right hemisphere 197.4
2256 Male, age 80, left hemisphere 166.5
2255 Female, age 91, right hemisphere 165.0
2534 Female, age 94, left hemisphere 154.7
1883 Male, age 76, both hemispheres 154.3
2830 Female, age 67, right hemisphere 138.0
Stria terminalis, bed nucleus
nTPM: 140.4
2201 Male, age 74, unknown 148.8
1974 Female, age 91, both hemispheres 137.7
2486 Female, age 94, both hemispheres 134.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 139.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 139.2
Samples: 152

Max nTPM: 331.8
Min nTPM: 3.7
Std nTPM: 57.4
Median nTPM: 136.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 331.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 295.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 295.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 287.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 276.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 274.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 272.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 248.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 244.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 233.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 231.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 225.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 224.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 224.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 219.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 218.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 217.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 215.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 211.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 205.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 203.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 198.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 198.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 197.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 197.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 196.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 194.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 189.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 184.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 184.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 180.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 180.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 178.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 174.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 174.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 172.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 164.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 163.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 162.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 161.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 160.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 158.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 158.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 155.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 155.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 153.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 150.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 150.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 150.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 149.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 147.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 146.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 146.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 145.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 145.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 143.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 143.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 142.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 142.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 142.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 142.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 142.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 141.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 141.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 141.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 140.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 139.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 139.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 139.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 138.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 138.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 138.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 137.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 137.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 136.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 136.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 136.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 135.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 134.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 133.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 132.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 132.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 130.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 130.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 128.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 127.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 127.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 126.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 125.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 124.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 120.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 118.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 117.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 116.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 116.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 116.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 115.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 114.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 114.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 113.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 112.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 112.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 112.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 110.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 109.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 107.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 106.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 106.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 105.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 105.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 105.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 103.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 101.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 101.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 100.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 100.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 100.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 100.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 99.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 96.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 94.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 91.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 91.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 88.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 87.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 87.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 87.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 86.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 86.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 84.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 83.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 83.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 81.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 81.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 80.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 79.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 79.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 75.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 75.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 72.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 65.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 64.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 61.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 59.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 54.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 52.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 49.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 46.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 44.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 36.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 23.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 70.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 70.7
FF:10151-102I7 76 years, female 70.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 26.3
Samples: 4

Max nTPM: 27.5
Min nTPM: 25.1
Sample A Male 25.9
Sample B Male 26.6
Sample C Female 27.5
Sample D Female 25.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
70474011 Antisense, RP_050614_04_G02, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.