MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:166.0 nTPM
HPA:166.0 nTPM
GTEx:124.1 nTPM
FANTOM5:35.2 Scaled Tags Per Million
Mouse:16.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 166.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 154.6
2586 Male, age 75, left hemisphere 201.5
2828 Female, age 72, unknown 177.3
1827 Male, age 72, unknown 153.0
1833 Male, age 53, unknown 150.2
1870 Female, age 42, unknown 147.8
2411 Female, age 72, unknown 146.8
1830 Male, age 51, unknown 145.5
2666 Male, age 74, left hemisphere 144.8
2219 Male, age 76, both hemispheres 141.9
2019 Male, age 18, unknown 136.9
Dorsal raphe nucleus
nTPM: 158.0
2016 Female, age 72, unknown 170.1
2047 Male, age 72, unknown 166.1
1828 Male, age 53, unknown 163.9
2298 Female, age 72, unknown 148.9
2750 Male, age 76, both hemispheres 141.0
Inferior colliculus
nTPM: 161.4
2849 Male, age 72, unknown 165.9
1848 Female, age 42, unknown 165.2
1890 Male, age 53, unknown 160.1
2097 Female, age 72, unknown 154.6
Median raphe nucleus
nTPM: 129.7
2220 Male, age 76, midline 129.7
Pedunculopontine tegmental nucleus
nTPM: 132.4
1921 Female, age 85, both hemispheres 150.6
2334 Male, age 80, both hemispheres 134.1
2338 Male, age 61, both hemispheres 112.3
Periaquaductal grey, anterior
nTPM: 166.0
2502 Female, age 75, unknown 173.1
1795 Male, age 51, unknown 163.6
1947 Male, age 18, unknown 161.3
Periaquaductal grey, dorsal
nTPM: 160.9
1840 Male, age 53, unknown 177.0
2464 Female, age 72, unknown 162.8
2850 Male, age 76, both hemispheres 155.2
1831 Male, age 72, unknown 148.6
Periaquaductal grey, lateral
nTPM: 163.3
2140 Male, age 76, both hemispheres 176.8
2053 Male, age 18, unknown 170.8
2272 Male, age 74, both hemispheres 142.3
Pretectal area
nTPM: 155.4
2825 Male, age 18, unknown 165.2
2667 Female, age 75, unknown 161.5
2316 Male, age 76, right hemisphere 160.9
1944 Female, age 72, unknown 158.1
1816 Male, age 51, unknown 157.4
2273 Male, age 74, both hemispheres 154.9
2407 Male, age 75, both hemispheres 151.8
1815 Male, age 53, unknown 151.7
1817 Female, age 42, unknown 151.5
2224 Female, age 72, unknown 150.7
2007 Male, age 72, unknown 145.7
Red nucleus
nTPM: 154.7
2503 Female, age 72, unknown 168.6
2588 Male, age 74, left hemisphere 165.6
2769 Male, age 72, unknown 163.7
2227 Male, age 72, unknown 163.3
1954 Female, age 42, unknown 161.8
1904 Male, age 53, unknown 155.9
1821 Female, age 72, unknown 153.9
1865 Male, age 51, unknown 150.7
2823 Male, age 76, right hemisphere 147.6
2725 Female, age 75, unknown 144.5
2584 Male, age 75, left hemisphere 141.9
2785 Male, age 18, unknown 138.2
Substantia nigra
nTPM: 156.0
2699 Male, age 18, unknown 174.6
1916 Female, age 42, unknown 172.5
1851 Male, age 51, unknown 161.6
2665 Male, age 74, both hemispheres 158.8
2583 Male, age 75, right hemisphere 156.2
2590 Female, age 75, unknown 155.1
1889 Female, age 72, unknown 150.5
2409 Female, age 72, unknown 148.7
2241 Male, age 72, unknown 145.0
1941 Male, age 53, unknown 136.9
Superior colliculus
nTPM: 158.6
2664 Male, age 75, both hemispheres 188.3
2261 Male, age 18, unknown 165.6
1796 Male, age 53, unknown 162.8
1995 Male, age 72, unknown 159.1
1839 Male, age 51, unknown 156.4
2668 Female, age 75, unknown 156.0
2087 Female, age 72, unknown 152.9
1895 Male, age 76, right hemisphere 150.4
1913 Female, age 42, unknown 147.3
2587 Male, age 74, left hemisphere 147.0
Ventral tegmental area
nTPM: 150.8
1915 Female, age 42, unknown 164.2
1942 Male, age 51, unknown 155.4
2410 Female, age 72, unknown 153.6
2021 Male, age 53, unknown 151.4
2223 Female, age 72, unknown 142.3
2218 Male, age 76, both hemispheres 138.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 124.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 124.1
Samples: 139

Max nTPM: 356.0
Min nTPM: 22.9
Std nTPM: 61.2
Median nTPM: 115.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 356.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 319.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 295.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 250.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 247.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 245.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 241.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 228.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 228.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 222.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 218.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.2
FF:10158-103A5 76 years, female 35.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 20.7
Min nTPM: 13.5
Sample A Male 20.7
Sample B Male 14.8
Sample C Female 13.5
Sample D Female 15.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70474011 Antisense, RP_050614_04_G02, Mouse strain C57BL/6J (56 days, male) 0.0

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