MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3096.2 nTPM
HPA:3096.2 nTPM
GTEx:2711.6 nTPM
FANTOM5:1377.2 Scaled Tags Per Million
Pig:1660.8 nTPM
Mouse:1312.2 nTPM
Allen mouse:24.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 3096.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2706.4
2828 Female, age 72, unknown 3262.7
2586 Male, age 75, left hemisphere 3191.2
2019 Male, age 18, unknown 2728.4
1833 Male, age 53, unknown 2664.9
2219 Male, age 76, both hemispheres 2651.2
1827 Male, age 72, unknown 2612.3
1830 Male, age 51, unknown 2526.0
1870 Female, age 42, unknown 2512.8
2666 Male, age 74, left hemisphere 2496.3
2411 Female, age 72, unknown 2417.9
Dorsal raphe nucleus
nTPM: 2793.8
2016 Female, age 72, unknown 2967.9
2298 Female, age 72, unknown 2888.0
1828 Male, age 53, unknown 2795.3
2047 Male, age 72, unknown 2772.6
2750 Male, age 76, both hemispheres 2545.5
Inferior colliculus
nTPM: 3001.4
1848 Female, age 42, unknown 3296.9
2849 Male, age 72, unknown 3114.9
1890 Male, age 53, unknown 2836.7
2097 Female, age 72, unknown 2756.9
Median raphe nucleus
nTPM: 2723.9
2220 Male, age 76, midline 2723.9
Pedunculopontine tegmental nucleus
nTPM: 2557.4
2334 Male, age 80, both hemispheres 2666.5
1921 Female, age 85, both hemispheres 2585.2
2338 Male, age 61, both hemispheres 2420.6
Periaquaductal grey, anterior
nTPM: 2975.2
1795 Male, age 51, unknown 3033.4
2502 Female, age 75, unknown 2996.2
1947 Male, age 18, unknown 2896.0
Periaquaductal grey, dorsal
nTPM: 3096.2
2850 Male, age 76, both hemispheres 3413.6
1840 Male, age 53, unknown 3296.0
2464 Female, age 72, unknown 2919.3
1831 Male, age 72, unknown 2755.7
Periaquaductal grey, lateral
nTPM: 3005.5
2140 Male, age 76, both hemispheres 3301.4
2053 Male, age 18, unknown 2897.1
2272 Male, age 74, both hemispheres 2817.9
Pretectal area
nTPM: 2976.3
1817 Female, age 42, unknown 3393.2
2273 Male, age 74, both hemispheres 3388.3
1815 Male, age 53, unknown 3050.3
2667 Female, age 75, unknown 3049.4
2007 Male, age 72, unknown 2921.1
2407 Male, age 75, both hemispheres 2911.5
2224 Female, age 72, unknown 2830.8
1816 Male, age 51, unknown 2815.4
1944 Female, age 72, unknown 2807.8
2825 Male, age 18, unknown 2797.4
2316 Male, age 76, right hemisphere 2774.1
Red nucleus
nTPM: 3012.5
2503 Female, age 72, unknown 3435.4
2227 Male, age 72, unknown 3271.9
2769 Male, age 72, unknown 3261.6
1904 Male, age 53, unknown 3203.5
1954 Female, age 42, unknown 3200.5
1865 Male, age 51, unknown 3127.0
1821 Female, age 72, unknown 3101.6
2588 Male, age 74, left hemisphere 2912.9
2785 Male, age 18, unknown 2872.3
2823 Male, age 76, right hemisphere 2716.0
2725 Female, age 75, unknown 2650.2
2584 Male, age 75, left hemisphere 2396.5
Substantia nigra
nTPM: 2655.6
2699 Male, age 18, unknown 3014.6
2583 Male, age 75, right hemisphere 2892.9
1889 Female, age 72, unknown 2845.4
1916 Female, age 42, unknown 2762.4
1851 Male, age 51, unknown 2680.6
2590 Female, age 75, unknown 2595.8
2665 Male, age 74, both hemispheres 2593.6
1941 Male, age 53, unknown 2436.7
2241 Male, age 72, unknown 2394.6
2409 Female, age 72, unknown 2339.7
Superior colliculus
nTPM: 2876.5
2664 Male, age 75, both hemispheres 3200.1
2668 Female, age 75, unknown 3178.7
1995 Male, age 72, unknown 3053.1
1796 Male, age 53, unknown 2877.0
2087 Female, age 72, unknown 2874.3
1839 Male, age 51, unknown 2833.6
2261 Male, age 18, unknown 2794.4
2587 Male, age 74, left hemisphere 2727.4
1913 Female, age 42, unknown 2682.6
1895 Male, age 76, right hemisphere 2543.6
Ventral tegmental area
nTPM: 2642.4
1942 Male, age 51, unknown 2728.0
2218 Male, age 76, both hemispheres 2682.1
1915 Female, age 42, unknown 2670.1
2410 Female, age 72, unknown 2664.0
2021 Male, age 53, unknown 2596.4
2223 Female, age 72, unknown 2513.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2711.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2711.6
Samples: 139

Max nTPM: 9065.5
Min nTPM: 387.3
Std nTPM: 1622.3
Median nTPM: 2355.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 9065.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 8488.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 7639.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 7539.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 7075.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 7035.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 6175.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 5911.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 5617.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 5440.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 5405.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1377.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1377.2
FF:10158-103A5 76 years, female 1377.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 1660.8
Pig sample Sample description nTPM
Midbrain
nTPM: 1479.8
Samples: 4

Max nTPM: 2454.7
Min nTPM: 868.4
Sample A Female 2454.7
Sample B Female 1708.4
Sample C Male 868.4
Sample D Male 887.7
Periaqueductal gray
nTPM: 1660.8
Samples: 3

Max nTPM: 1920.5
Min nTPM: 1393.8
Sample B Female 1668.1
Sample C Male 1920.5
Sample D Male 1393.8
Substantia nigra
nTPM: 1643.4
Samples: 4

Max nTPM: 1903.2
Min nTPM: 1141.5
Sample A Female 1796.6
Sample B Female 1903.2
Sample C Male 1141.5
Sample D Male 1732.1
Superior colliculi
nTPM: 1414.1
Samples: 4

Max nTPM: 1700.3
Min nTPM: 1096.1
Sample A Female 1700.3
Sample B Female 1647.0
Sample C Male 1096.1
Sample D Male 1213.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1312.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 1312.2
Samples: 4

Max nTPM: 1510.7
Min nTPM: 1113.4
Sample A Male 1510.7
Sample B Male 1219.0
Sample C Female 1113.4
Sample D Female 1405.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 24.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.7
75496213 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 26.3
75457612 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 25.0
75457610 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 24.9
75496215 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 24.8
75457613 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 24.1
69120555 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 23.7
75496721 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 23.6
75457611 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 23.6
75496212 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 23.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.