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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:3302.7 nTPM
HPA:3302.7 nTPM
FANTOM5:1800.2 Scaled Tags Per Million
Pig:1388.1 nTPM
Mouse:1788.6 nTPM
Allen mouse:23.1 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 3302.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 2632.1
2497 Male, age 66, unknown 2901.6
2032 Female, age 42, unknown 2729.0
2396 Male, age 61, right hemisphere 2265.8
Centromedial thalamic nucleus
nTPM: 2769.3
2279 Female, age 85, left hemisphere 2927.0
2401 Male, age 76, right hemisphere 2611.6
Habenula
nTPM: 2872.0
2276 Male, age 66, unknown 3005.7
2203 Male, age 61, left hemisphere 2895.9
1957 Male, age 80, both hemispheres 2894.4
2252 Male, age 62, unknown 2692.0
Lateral geniculate body
nTPM: 2966.6
2857 Male, age 74, right hemisphere 3700.9
2399 Male, age 61, left hemisphere 3281.2
2035 Female, age 72, unknown 3050.7
2575 Female, age 94, right hemisphere 2936.5
2659 Male, age 66, unknown 2935.5
1953 Male, age 62, unknown 2769.4
2841 Male, age 80, both hemispheres 2655.0
2106 Female, age 67, right hemisphere 2403.2
Lateral thalamic nuclei
nTPM: 3113.3
2573 Female, age 94, left hemisphere 3795.6
2661 Female, age 72, unknown 3515.9
2577 Male, age 74, both hemispheres 2973.3
2765 Female, age 67, both hemispheres 2678.9
1903 Male, age 76, left hemisphere 2603.0
Medial dorsal thalamic nucleus
nTPM: 3002.0
2572 Female, age 94, right hemisphere 4289.9
2492 Male, age 75, right hemisphere 3251.2
2498 Male, age 66, unknown 3112.7
1810 Male, age 48, unknown 3065.6
2576 Male, age 74, both hemispheres 2957.4
2026 Male, age 62, unknown 2921.7
2660 Female, age 72, unknown 2881.9
1930 Female, age 42, unknown 2856.8
2283 Male, age 80, right hemisphere 2829.7
1859 Male, age 76, both hemispheres 2760.7
2039 Female, age 72, unknown 2747.3
1971 Male, age 61, right hemisphere 2689.9
2402 Female, age 67, both hemispheres 2660.8
Medial geniculate body
nTPM: 3207.7
2650 Female, age 94, left hemisphere 4050.3
2571 Male, age 75, right hemisphere 3325.2
2217 Female, age 72, unknown 3308.0
2657 Male, age 74, right hemisphere 3017.5
2207 Male, age 80, right hemisphere 2953.9
2049 Male, age 76, both hemispheres 2945.1
1811 Female, age 42, unknown 2854.3
Nucleus reuniens
nTPM: 2529.8
2205 Male, age 80, left hemisphere 2926.6
2212 Female, age 67, left hemisphere 2477.1
2210 Female, age 85, left hemisphere 2185.8
Nucleus rhomboideus
nTPM: 2558.2
2206 Male, age 80, both hemispheres 3063.6
2213 Female, age 67, left hemisphere 2418.5
2280 Female, age 85, left hemisphere 2192.6
Posterior thalamic nucleus
nTPM: 3302.7
2649 Female, age 94, both hemispheres 4516.6
2655 Male, age 74, right hemisphere 3531.8
2495 Female, age 67, right hemisphere 2707.6
2266 Male, age 76, right hemisphere 2454.9
Pulvinar
nTPM: 3045.1
2724 Male, age 74, right hemisphere 3354.1
2499 Male, age 66, unknown 3249.7
2398 Male, age 61, left hemisphere 3196.1
1899 Female, age 42, unknown 3155.2
2582 Female, age 72, unknown 3149.7
1932 Male, age 80, right hemisphere 3082.5
1972 Male, age 62, unknown 2966.7
1929 Male, age 48, unknown 2822.3
2496 Female, age 67, right hemisphere 2810.5
2214 Male, age 76, right hemisphere 2664.2
Subthalamic nucleus
nTPM: 2570.3
2282 Male, age 61, both hemispheres 3231.4
2216 Male, age 48, unknown 2765.3
2124 Male, age 62, unknown 2568.8
2056 Female, age 72, unknown 2510.9
2275 Male, age 66, unknown 2471.7
2779 Female, age 42, unknown 2464.3
2406 Female, age 72, unknown 2407.1
2658 Male, age 74, both hemispheres 2142.9
Ventral posterolateral thalamic nucleus
nTPM: 2908.3
2197 Male, age 80, both hemispheres 3328.0
2570 Male, age 75, right hemisphere 2996.9
2581 Female, age 72, unknown 2978.8
2397 Male, age 61, right hemisphere 2757.4
2578 Male, age 74, both hemispheres 2697.1
2740 Male, age 76, right hemisphere 2691.4
Ventral posteromedial thalamic nucleus
nTPM: 3002.1
2758 Male, age 80, both hemispheres 3373.8
2281 Male, age 75, right hemisphere 3085.0
2127 Male, age 76, right hemisphere 2954.1
2202 Male, age 61, left hemisphere 2920.3
2653 Male, age 74, both hemispheres 2677.4
Ventral thalamic nuclei
nTPM: 2907.0
2858 Female, age 72, unknown 3430.2
2204 Male, age 80, both hemispheres 3245.0
2285 Male, age 62, unknown 2990.5
2580 Male, age 66, unknown 2901.8
1912 Female, age 42, unknown 2884.4
2291 Female, age 72, unknown 2703.9
1860 Male, age 76, both hemispheres 2676.7
1845 Male, age 48, unknown 2676.3
2652 Male, age 74, left hemisphere 2654.5
Ventromedial nucleus
nTPM: 2354.3
1982 Female, age 72, unknown 2365.3
1822 Female, age 42, unknown 2343.3
Zona incerta
nTPM: 2464.2
2208 Male, age 80, right hemisphere 3031.0
2663 Female, age 72, unknown 2557.6
2403 Male, age 62, unknown 2450.2
2215 Male, age 66, unknown 2225.5
2822 Male, age 74, right hemisphere 2056.6

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1800.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 1800.2
FF:10154-103A1 76 years, female 1800.2

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1388.1
Pig sample Sample description nTPM
Thalamus
nTPM: 1388.2
Samples: 4

Max nTPM: 1839.8
Min nTPM: 924.9
Sample A Female 1563.2
Sample B Female 924.9
Sample C Male 1224.7
Sample D Male 1839.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1788.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 1788.6
Samples: 4

Max nTPM: 2173.7
Min nTPM: 1479.1
Sample A Male 2173.7
Sample B Male 1528.4
Sample C Female 1973.2
Sample D Female 1479.1

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 23.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 23.1
75496213 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 24.4
75496215 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 23.9
75457610 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 23.6
75457613 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 22.9
75496721 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 22.7
75457612 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 22.5
75496212 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 22.5
75496211 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 22.1
75457611 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 22.0
75496720 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 21.8
69120555 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 20.8
75492862 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 19.9
69117385 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 19.7
75492865 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 19.3
75492852 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 18.7
75496741 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 18.3
75496731 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 18.2
75492864 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 17.7

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