BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:60.1 nTPM
HPA:60.1 nTPM
GTEx:50.6 nTPM
FANTOM5:62.7 Scaled Tags Per Million
Pig:23.9 nTPM
Mouse:82.5 nTPM
Allen mouse:2.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA012863
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 60.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 51.8
2288 Male, age 75, left hemisphere 53.9
2846 Female, age 79, unknown 53.8
2481 Female, age 94, left hemisphere 53.7
1781 Male, age 74, unknown 53.6
1857 Female, age 85, left hemisphere 51.4
1854 Male, age 80, left hemisphere 50.9
2290 Female, age 72, unknown 49.2
2289 Male, age 61, right hemisphere 47.5
Claustrum
nTPM: 53.5
2198 Male, age 80, both hemispheres 56.4
2196 Female, age 79, unknown 56.2
2568 Male, age 61, both hemispheres 55.1
1956 Male, age 74, unknown 54.1
2392 Female, age 94, both hemispheres 53.8
2284 Female, age 91, both hemispheres 52.0
2292 Female, age 85, both hemispheres 52.0
2491 Male, age 75, both hemispheres 51.8
2645 Female, age 72, unknown 50.2
Globus pallidus, externus
nTPM: 56.4
2395 Male, age 75, both hemispheres 68.8
2772 Female, age 79, unknown 61.5
1996 Male, age 80, right hemisphere 55.2
2567 Female, age 72, unknown 48.4
2646 Male, age 61, right hemisphere 48.3
Globus pallidus, internus
nTPM: 52.6
2037 Male, age 80, right hemisphere 54.3
1818 Male, age 74, unknown 54.2
2287 Male, age 75, right hemisphere 53.2
2483 Female, age 94, right hemisphere 53.2
2778 Female, age 91, both hemispheres 52.9
2111 Female, age 85, right hemisphere 50.9
2566 Female, age 72, unknown 49.8
Nucleus accumbens
nTPM: 53.1
1856 Female, age 91, right hemisphere 57.2
2286 Male, age 75, left hemisphere 56.6
1783 Male, age 74, unknown 53.1
2391 Female, age 94, left hemisphere 52.9
2732 Male, age 80, right hemisphere 51.9
2698 Female, age 72, unknown 51.7
1806 Female, age 85, left hemisphere 51.5
2824 Male, age 61, right hemisphere 50.2
Nucleus basalis of Meynert
nTPM: 52.1
2821 Male, age 75, both hemispheres 56.4
2484 Female, age 94, left hemisphere 52.9
2393 Male, age 80, right hemisphere 51.1
2569 Male, age 61, both hemispheres 48.0
Nucleus of the diagonal band
nTPM: 60.1
1812 Female, age 91, both hemispheres 65.3
2775 Male, age 80, right hemisphere 63.5
2029 Male, age 61, right hemisphere 58.2
2195 Female, age 85, both hemispheres 57.4
1979 Male, age 74, unknown 56.1
Olfactory tubercle
nTPM: 57.2
1998 Female, age 91, both hemispheres 60.1
2487 Female, age 94, left hemisphere 59.6
1846 Male, age 80, right hemisphere 59.4
2856 Male, age 75, right hemisphere 49.5
Putamen
nTPM: 50.5
2482 Female, age 94, left hemisphere 54.6
2466 Female, age 79, unknown 53.8
1937 Female, age 91, right hemisphere 52.7
1838 Male, age 80, right hemisphere 49.5
2647 Male, age 75, left hemisphere 48.4
1829 Male, age 74, unknown 47.6
2489 Female, age 72, unknown 46.8
Septal nuclei
nTPM: 58.7
1960 Male, age 74, unknown 63.5
2031 Female, age 72, unknown 62.4
2009 Female, age 91, both hemispheres 61.4
2629 Female, age 94, right hemisphere 57.7
2059 Female, age 85, both hemispheres 56.6
2199 Male, age 80, right hemisphere 55.4
2394 Male, age 61, left hemisphere 54.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 50.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.0
Samples: 246

Max nTPM: 66.2
Min nTPM: 34.6
Std nTPM: 5.7
Median nTPM: 47.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 66.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 65.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 65.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 64.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 61.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 60.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 60.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 60.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 59.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 59.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 59.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 50.6
Samples: 246

Max nTPM: 112.0
Min nTPM: 29.7
Std nTPM: 8.5
Median nTPM: 50.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 112.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 80.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 72.0
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 70.5
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 68.0
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 67.6
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 67.2
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 65.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 63.4
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 62.5
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 62.4
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Brain - Putamen (basal ganglia)
Average nTPM: 48.5
Samples: 205

Max nTPM: 68.2
Min nTPM: 30.6
Std nTPM: 6.3
Median nTPM: 48.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 68.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 65.5
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 65.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 61.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 60.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 60.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 60.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 59.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 59.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 57.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 57.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 62.7
FF:10164-103B2 76 years, female 62.7
Globus pallidus
Scaled Tags Per Million: 59.1
FF:10161-103A8 76 years, female 63.7
FF:10175-103C4 60 years, female 54.4
Nucleus accumbens
Scaled Tags Per Million: 56.0
FF:10037-101F1 23-56 years, mixed 56.0
Putamen
Scaled Tags Per Million: 56.7
FF:10176-103C5 60 years, female 56.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.9
Pig sample Sample description nTPM
Caudate
nTPM: 17.5
Samples: 4

Max nTPM: 20.8
Min nTPM: 14.7
Sample A Female 14.7
Sample B Female 18.5
Sample C Male 20.8
Sample D Male 16.1
Putamen
nTPM: 18.4
Samples: 4

Max nTPM: 23.8
Min nTPM: 14.3
Sample A Female 17.3
Sample B Female 14.3
Sample C Male 23.8
Sample D Male 18.3
Septum
nTPM: 23.9
Samples: 4

Max nTPM: 40.5
Min nTPM: 15.8
Sample A Female 20.0
Sample B Female 19.2
Sample C Male 40.5
Sample D Male 15.8
Ventral pallidum
nTPM: 20.2
Samples: 4

Max nTPM: 32.8
Min nTPM: 14.9
Sample A Female 14.9
Sample B Female 17.4
Sample C Male 32.8
Sample D Male 15.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 82.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 56.2
Samples: 4

Max nTPM: 59.6
Min nTPM: 53.9
Sample A Male 59.6
Sample B Male 56.7
Sample C Female 53.9
Sample D Female 54.7
Septum
nTPM: 82.6
Samples: 4

Max nTPM: 92.5
Min nTPM: 75.1
Sample A Male 75.1
Sample B Male 92.5
Sample C Female 86.8
Sample D Female 75.8
Ventral forebrain
nTPM: 63.5
Samples: 4

Max nTPM: 69.2
Min nTPM: 58.5
Sample A Male 58.5
Sample B Male 69.2
Sample C Female 65.6
Sample D Female 60.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.6
69837580 Antisense, RP_050222_01_H02, Mouse strain C57BL/6J (56 days, male) 1.6
Pallidum
Expression energy: 2.2
69837580 Antisense, RP_050222_01_H02, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

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