MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.8 nTPM
HPA:62.8 nTPM
GTEx:55.3 nTPM
FANTOM5:61.1 Scaled Tags Per Million
Pig:31.1 nTPM
Mouse:63.9 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.8
2411 Female, age 72, unknown 60.9
2219 Male, age 76, both hemispheres 59.9
1870 Female, age 42, unknown 59.2
1833 Male, age 53, unknown 57.9
2586 Male, age 75, left hemisphere 57.3
2666 Male, age 74, left hemisphere 56.4
1827 Male, age 72, unknown 56.0
1830 Male, age 51, unknown 56.0
2828 Female, age 72, unknown 53.9
2019 Male, age 18, unknown 50.3
Dorsal raphe nucleus
nTPM: 60.2
2298 Female, age 72, unknown 63.9
2047 Male, age 72, unknown 63.7
1828 Male, age 53, unknown 60.7
2016 Female, age 72, unknown 57.2
2750 Male, age 76, both hemispheres 55.7
Inferior colliculus
nTPM: 57.5
2849 Male, age 72, unknown 58.4
1848 Female, age 42, unknown 58.2
2097 Female, age 72, unknown 57.5
1890 Male, age 53, unknown 55.8
Median raphe nucleus
nTPM: 61.5
2220 Male, age 76, midline 61.5
Pedunculopontine tegmental nucleus
nTPM: 59.2
2334 Male, age 80, both hemispheres 59.4
2338 Male, age 61, both hemispheres 59.2
1921 Female, age 85, both hemispheres 59.0
Periaquaductal grey, anterior
nTPM: 57.2
1947 Male, age 18, unknown 61.8
1795 Male, age 51, unknown 56.3
2502 Female, age 75, unknown 53.4
Periaquaductal grey, dorsal
nTPM: 57.0
1840 Male, age 53, unknown 61.6
2850 Male, age 76, both hemispheres 58.8
2464 Female, age 72, unknown 54.5
1831 Male, age 72, unknown 53.0
Periaquaductal grey, lateral
nTPM: 55.5
2053 Male, age 18, unknown 56.2
2140 Male, age 76, both hemispheres 55.2
2272 Male, age 74, both hemispheres 55.2
Pretectal area
nTPM: 57.2
2825 Male, age 18, unknown 62.1
2224 Female, age 72, unknown 60.5
2407 Male, age 75, both hemispheres 58.6
1944 Female, age 72, unknown 57.1
2667 Female, age 75, unknown 56.9
1815 Male, age 53, unknown 56.5
2273 Male, age 74, both hemispheres 56.5
1817 Female, age 42, unknown 56.1
1816 Male, age 51, unknown 55.7
2316 Male, age 76, right hemisphere 54.5
2007 Male, age 72, unknown 54.4
Red nucleus
nTPM: 53.3
2725 Female, age 75, unknown 57.7
1821 Female, age 72, unknown 56.8
2769 Male, age 72, unknown 55.0
2584 Male, age 75, left hemisphere 54.2
1904 Male, age 53, unknown 54.1
2503 Female, age 72, unknown 53.7
1954 Female, age 42, unknown 53.4
2227 Male, age 72, unknown 53.1
1865 Male, age 51, unknown 52.9
2588 Male, age 74, left hemisphere 50.1
2785 Male, age 18, unknown 49.2
2823 Male, age 76, right hemisphere 49.1
Substantia nigra
nTPM: 62.8
1916 Female, age 42, unknown 68.8
1851 Male, age 51, unknown 66.1
2241 Male, age 72, unknown 65.6
2699 Male, age 18, unknown 64.0
2590 Female, age 75, unknown 63.2
2665 Male, age 74, both hemispheres 62.5
2583 Male, age 75, right hemisphere 62.0
2409 Female, age 72, unknown 60.2
1889 Female, age 72, unknown 59.2
1941 Male, age 53, unknown 55.9
Superior colliculus
nTPM: 56.0
2587 Male, age 74, left hemisphere 59.1
1839 Male, age 51, unknown 57.2
2261 Male, age 18, unknown 57.1
1796 Male, age 53, unknown 56.8
2664 Male, age 75, both hemispheres 55.2
2087 Female, age 72, unknown 55.1
1995 Male, age 72, unknown 54.9
1913 Female, age 42, unknown 54.8
1895 Male, age 76, right hemisphere 54.7
2668 Female, age 75, unknown 54.7
Ventral tegmental area
nTPM: 61.6
2410 Female, age 72, unknown 65.7
1915 Female, age 42, unknown 63.9
2218 Male, age 76, both hemispheres 62.1
2021 Male, age 53, unknown 61.6
1942 Male, age 51, unknown 60.1
2223 Female, age 72, unknown 56.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.3
Samples: 139

Max nTPM: 92.1
Min nTPM: 22.6
Std nTPM: 13.7
Median nTPM: 54.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 92.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 89.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 86.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 86.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 85.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 82.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 78.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 77.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 75.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 74.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 74.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.1
FF:10158-103A5 76 years, female 61.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.1
Pig sample Sample description nTPM
Midbrain
nTPM: 26.1
Samples: 4

Max nTPM: 27.6
Min nTPM: 25.0
Sample A Female 25.4
Sample B Female 25.0
Sample C Male 26.2
Sample D Male 27.6
Periaqueductal gray
nTPM: 26.2
Samples: 3

Max nTPM: 31.8
Min nTPM: 22.8
Sample B Female 23.9
Sample C Male 31.8
Sample D Male 22.8
Substantia nigra
nTPM: 31.1
Samples: 4

Max nTPM: 40.6
Min nTPM: 19.1
Sample A Female 40.6
Sample B Female 24.2
Sample C Male 40.4
Sample D Male 19.1
Superior colliculi
nTPM: 27.4
Samples: 4

Max nTPM: 31.3
Min nTPM: 24.7
Sample A Female 31.3
Sample B Female 24.7
Sample C Male 27.0
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.0
Samples: 4

Max nTPM: 67.4
Min nTPM: 60.5
Sample A Male 60.5
Sample B Male 67.4
Sample C Female 65.8
Sample D Female 62.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
69837580 Antisense, RP_050222_01_H02, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.