HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		202.785
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:113.1 nTPM
HPA:113.1 nTPM
GTEx:84.9 nTPM
FANTOM5:219.0 Scaled Tags Per Million
Pig:63.9 nTPM
Mouse:79.5 nTPM
Allen mouse:16.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003103Antibody HPA037536
Glial cells Not detectedNot detected
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA037536
Hippocampal formation mean intensity 202.785
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 116.331
Molecular layer of the dentate gyrus 82.308
Granular dentate gyrus 138.701
CA1 - oriens layer 65.300
CA1 - pyramidal layer 184.990
CA1 - radiatum layer 85.517
CA2 - oriens layer 99.429
CA2 - pyramidal layer 202.785
CA2 - radiatum layer 107.427
CA3 - oriens layer 82.864
CA3 - pyramidal layer 201.613
CA3 - radiatum layer 74.835
Stratum lucidum 88.574
Lacunosum moleculare 108.749
Subiculum 62.513

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 113.1
Sample id Sample description nTPM
Hippocampus
nTPM: 60.4
1898 Male, age 80, left hemisphere 77.6
2621 Female, age 67, right hemisphere 65.6
1855 Male, age 76, left hemisphere 63.5
2148 Female, age 91, left hemisphere 55.4
2529 Female, age 94, left hemisphere 53.8
1911 Female, age 85, right hemisphere 46.7
Dentate gyrus
nTPM: 70.1
2531 Female, age 67, both hemispheres 79.6
1927 Female, age 91, both hemispheres 74.1
2246 Female, age 85, both hemispheres 69.2
2010 Male, age 76, both hemispheres 67.3
2528 Male, age 74, both hemispheres 66.7
2530 Female, age 94, left hemisphere 63.8
Entorhinal gyrus
nTPM: 87.0
2613 Female, age 94, left hemisphere 120.8
2764 Male, age 80, right hemisphere 110.0
1938 Female, age 85, left hemisphere 91.9
1787 Male, age 76, left hemisphere 77.9
2686 Male, age 75, right hemisphere 66.9
2117 Female, age 91, right hemisphere 54.9
Hippocampus, CA1
nTPM: 75.0
2749 Male, age 80, left hemisphere 93.5
2045 Male, age 76, both hemispheres 79.2
2082 Female, age 91, right hemisphere 70.8
1873 Female, age 85, both hemispheres 66.3
2527 Male, age 74, both hemispheres 65.0
Hippocampus, CA2
nTPM: 64.5
1892 Male, age 76, both hemispheres 72.4
1963 Male, age 80, left hemisphere 68.9
1940 Female, age 85, left hemisphere 65.5
2113 Female, age 91, right hemisphere 64.0
2437 Female, age 94, left hemisphere 59.1
2249 Male, age 74, both hemispheres 57.1
Hippocampus, CA3
nTPM: 70.2
2620 Female, age 94, left hemisphere 99.8
2137 Male, age 80, left hemisphere 86.3
2436 Male, age 74, both hemispheres 62.5
2861 Female, age 67, both hemispheres 58.1
1867 Male, age 76, both hemispheres 57.3
1891 Female, age 85, both hemispheres 56.9
Parahippocampal cortex
nTPM: 80.5
1850 Male, age 80, both hemispheres 107.3
2693 Female, age 94, both hemispheres 90.9
1990 Female, age 91, right hemisphere 86.3
2532 Female, age 72, left hemisphere 86.3
2245 Female, age 91, both hemispheres 85.1
1933 Female, age 85, both hemispheres 84.0
2250 Female, age 67, right hemisphere 73.7
2622 Female, age 67, right hemisphere 69.7
2018 Male, age 76, both hemispheres 62.8
2692 Male, age 74, both hemispheres 58.5
Perirhinal gyrus
nTPM: 113.1
1794 Male, age 80, right hemisphere 131.1
1847 Female, age 91, left hemisphere 124.7
1841 Female, age 85, right hemisphere 113.5
2848 Male, age 76, right hemisphere 102.4
2521 Female, age 94, right hemisphere 93.6
Subiculum
nTPM: 60.0
1977 Female, age 85, both hemispheres 88.6
2619 Male, age 74, both hemispheres 63.6
1901 Male, age 80, both hemispheres 58.1
2438 Female, age 94, left hemisphere 56.7
2729 Female, age 91, right hemisphere 49.6
2042 Male, age 76, both hemispheres 43.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 84.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 84.9
Samples: 197

Max nTPM: 164.7
Min nTPM: 36.3
Std nTPM: 27.1
Median nTPM: 79.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 164.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 155.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 152.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 150.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 146.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 146.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 144.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 143.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 141.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 137.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 136.6
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 219.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 219.0
FF:10169-103B7 60 years, female 255.3
FF:10153-102I9 76 years, female 182.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 63.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 45.1
Samples: 4

Max nTPM: 52.9
Min nTPM: 32.9
Sample A Female 52.9
Sample B Female 50.3
Sample C Male 44.2
Sample D Male 32.9
Entorhinal cortex
nTPM: 63.9
Samples: 4

Max nTPM: 69.4
Min nTPM: 55.6
Sample A Female 67.1
Sample B Female 63.4
Sample C Male 69.4
Sample D Male 55.6
Subiculum
nTPM: 61.1
Samples: 4

Max nTPM: 83.5
Min nTPM: 45.8
Sample A Female 83.5
Sample B Female 54.3
Sample C Male 60.7
Sample D Male 45.8
Ventral hippocampus
nTPM: 58.1
Samples: 4

Max nTPM: 86.9
Min nTPM: 42.4
Sample A Female 56.2
Sample B Female 42.4
Sample C Male 86.9
Sample D Male 47.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 79.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 79.5
Samples: 4

Max nTPM: 98.0
Min nTPM: 72.1
Sample A Male 73.1
Sample B Male 72.1
Sample C Female 74.8
Sample D Female 98.0
Hippocampal formation
nTPM: 75.8
Samples: 4

Max nTPM: 80.8
Min nTPM: 70.1
Sample A Male 76.3
Sample B Male 80.8
Sample C Female 75.8
Sample D Female 70.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 16.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.2
293903 Antisense, RP_040617_01_F01, Mouse strain C57BL/6J (56 days, male) 16.3
77620309 Antisense, RP_070205_01_A10, Mouse strain C57BL/6J (56 days, male) 16.0
355883 Antisense, RP_040617_01_F01, Mouse strain C57BL/6J (56 days, male) 12.3
77869130 Antisense, RP_070205_01_A10, Mouse strain C57BL/6J (56 days, male) 9.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.