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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:183.7 nTPM
HPA:183.7 nTPM
GTEx:216.2 nTPM
FANTOM5:486.3 Scaled Tags Per Million
Pig:64.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 183.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 172.7
1981 Female, age 72, midline 180.7
2194 Female, age 79, both hemispheres 175.0
2048 Male, age 55, midline 174.0
2816 Male, age 47, midline 172.1
2565 Male, age 75, midline 161.7
Cervical spinal cord, dorsal horn
nTPM: 183.7
2296 Male, age 66, both hemispheres 191.7
2069 Male, age 47, both hemispheres 187.2
2173 Female, age 72, unknown 184.7
2721 Male, age 90, both hemispheres 180.3
2297 Male, age 75, both hemispheres 179.3
1877 Male, age 55, unknown 179.1
Cervical spinal cord, ventral horn
nTPM: 170.6
2480 Male, age 75, both hemispheres 175.2
2098 Female, age 72, unknown 174.2
2068 Male, age 55, unknown 173.7
2295 Male, age 66, both hemispheres 170.5
2820 Female, age 79, both hemispheres 168.9
2809 Male, age 90, both hemispheres 161.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 216.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 216.2
Samples: 159

Max nTPM: 328.8
Min nTPM: 103.4
Std nTPM: 42.4
Median nTPM: 211.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 328.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 306.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 303.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 295.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 294.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 294.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 290.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 286.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 286.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 282.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 278.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 277.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 276.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 276.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 275.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 275.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 273.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 272.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 271.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 269.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 266.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 266.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 265.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 264.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 264.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 262.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 261.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 261.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 258.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 257.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 255.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 254.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 254.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 254.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 253.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 253.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 253.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 252.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 251.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 251.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 248.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 247.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 247.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 246.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 244.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 244.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 244.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 242.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 241.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 240.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 238.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 237.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 236.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 236.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 235.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 234.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 233.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 233.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 229.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 228.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 227.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 226.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 225.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 225.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 225.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 225.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 224.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 224.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 222.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 222.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 220.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 218.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 216.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 216.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 216.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 213.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 213.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 212.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 212.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 211.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 210.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 210.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 209.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 209.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 207.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 206.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 206.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 205.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 205.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 205.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 204.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 204.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 203.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 203.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 202.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 200.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 197.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 195.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 194.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 194.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 194.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 192.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 192.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 192.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 191.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 191.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 190.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 189.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 189.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 189.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 188.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 188.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 187.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 187.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 186.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 186.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 186.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 186.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 185.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 185.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 184.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 183.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 183.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 183.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 182.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 182.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 182.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 182.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 182.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 181.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 181.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 178.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 178.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 177.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 177.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 176.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 175.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 174.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 174.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 173.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 171.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 171.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 170.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 170.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 167.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 165.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 163.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 161.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 160.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 156.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 156.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 150.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 150.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 136.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 128.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 127.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 118.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 115.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 103.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 486.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 486.3
FF:10181-103D1 60 years, female 640.8
FF:10159-103A6 76 years, female 331.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 64.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 57.9
Samples: 4

Max nTPM: 64.5
Min nTPM: 51.1
Sample A Female 64.5
Sample B Female 57.8
Sample C Male 51.1
Sample D Male 58.0
Ventral spinal cord
nTPM: 64.2
Samples: 4

Max nTPM: 73.0
Min nTPM: 55.4
Sample A Female 55.4
Sample B Female 66.2
Sample C Male 73.0
Sample D Male 62.2

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