MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:185.7 nTPM
HPA:185.7 nTPM
GTEx:204.0 nTPM
FANTOM5:315.2 Scaled Tags Per Million
Pig:80.3 nTPM
Mouse:34.4 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 185.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 166.9
1870 Female, age 42, unknown 177.7
2411 Female, age 72, unknown 173.5
1827 Male, age 72, unknown 172.4
2219 Male, age 76, both hemispheres 168.9
2666 Male, age 74, left hemisphere 167.4
1833 Male, age 53, unknown 167.1
1830 Male, age 51, unknown 166.7
2019 Male, age 18, unknown 161.4
2828 Female, age 72, unknown 158.5
2586 Male, age 75, left hemisphere 154.8
Dorsal raphe nucleus
nTPM: 168.1
2750 Male, age 76, both hemispheres 176.7
2298 Female, age 72, unknown 169.9
2047 Male, age 72, unknown 166.7
1828 Male, age 53, unknown 165.3
2016 Female, age 72, unknown 161.9
Inferior colliculus
nTPM: 174.1
2849 Male, age 72, unknown 180.4
2097 Female, age 72, unknown 175.0
1848 Female, age 42, unknown 171.1
1890 Male, age 53, unknown 169.8
Median raphe nucleus
nTPM: 185.7
2220 Male, age 76, midline 185.7
Pedunculopontine tegmental nucleus
nTPM: 178.4
1921 Female, age 85, both hemispheres 181.6
2334 Male, age 80, both hemispheres 179.3
2338 Male, age 61, both hemispheres 174.3
Periaquaductal grey, anterior
nTPM: 171.8
1947 Male, age 18, unknown 177.0
2502 Female, age 75, unknown 170.9
1795 Male, age 51, unknown 167.5
Periaquaductal grey, dorsal
nTPM: 172.9
2850 Male, age 76, both hemispheres 178.0
1840 Male, age 53, unknown 176.9
1831 Male, age 72, unknown 168.6
2464 Female, age 72, unknown 168.1
Periaquaductal grey, lateral
nTPM: 166.5
2140 Male, age 76, both hemispheres 167.6
2053 Male, age 18, unknown 167.0
2272 Male, age 74, both hemispheres 164.9
Pretectal area
nTPM: 173.0
1944 Female, age 72, unknown 182.8
2224 Female, age 72, unknown 177.8
2007 Male, age 72, unknown 175.8
1817 Female, age 42, unknown 175.1
1816 Male, age 51, unknown 174.8
2825 Male, age 18, unknown 173.8
1815 Male, age 53, unknown 172.6
2667 Female, age 75, unknown 169.9
2407 Male, age 75, both hemispheres 168.6
2273 Male, age 74, both hemispheres 167.0
2316 Male, age 76, right hemisphere 164.7
Red nucleus
nTPM: 166.5
1821 Female, age 72, unknown 173.7
1954 Female, age 42, unknown 171.1
2503 Female, age 72, unknown 169.6
2725 Female, age 75, unknown 169.5
2823 Male, age 76, right hemisphere 169.1
1865 Male, age 51, unknown 166.3
1904 Male, age 53, unknown 165.7
2227 Male, age 72, unknown 164.9
2769 Male, age 72, unknown 164.2
2785 Male, age 18, unknown 162.8
2584 Male, age 75, left hemisphere 162.2
2588 Male, age 74, left hemisphere 158.7
Substantia nigra
nTPM: 171.6
1889 Female, age 72, unknown 179.5
1941 Male, age 53, unknown 177.4
1916 Female, age 42, unknown 176.6
2241 Male, age 72, unknown 175.3
2699 Male, age 18, unknown 172.9
2409 Female, age 72, unknown 172.7
1851 Male, age 51, unknown 171.5
2590 Female, age 75, unknown 165.7
2665 Male, age 74, both hemispheres 162.7
2583 Male, age 75, right hemisphere 162.0
Superior colliculus
nTPM: 168.7
1895 Male, age 76, right hemisphere 175.7
2668 Female, age 75, unknown 174.3
2587 Male, age 74, left hemisphere 172.2
2087 Female, age 72, unknown 171.8
1839 Male, age 51, unknown 169.8
2261 Male, age 18, unknown 169.8
1796 Male, age 53, unknown 169.7
1913 Female, age 42, unknown 165.4
1995 Male, age 72, unknown 160.1
2664 Male, age 75, both hemispheres 157.9
Ventral tegmental area
nTPM: 172.6
2218 Male, age 76, both hemispheres 177.3
1915 Female, age 42, unknown 174.0
1942 Male, age 51, unknown 172.6
2223 Female, age 72, unknown 171.9
2410 Female, age 72, unknown 171.7
2021 Male, age 53, unknown 168.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 204.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 204.0
Samples: 139

Max nTPM: 401.1
Min nTPM: 105.1
Std nTPM: 46.0
Median nTPM: 203.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 401.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 302.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 293.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 286.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 285.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 276.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 275.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 275.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 274.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 273.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 273.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 315.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 315.2
FF:10158-103A5 76 years, female 315.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 80.3
Pig sample Sample description nTPM
Midbrain
nTPM: 78.7
Samples: 4

Max nTPM: 83.5
Min nTPM: 75.1
Sample A Female 83.5
Sample B Female 76.2
Sample C Male 75.1
Sample D Male 80.1
Periaqueductal gray
nTPM: 80.3
Samples: 3

Max nTPM: 103.3
Min nTPM: 66.6
Sample B Female 70.9
Sample C Male 103.3
Sample D Male 66.6
Substantia nigra
nTPM: 77.6
Samples: 4

Max nTPM: 103.3
Min nTPM: 46.4
Sample A Female 103.3
Sample B Female 58.4
Sample C Male 102.1
Sample D Male 46.4
Superior colliculi
nTPM: 72.4
Samples: 4

Max nTPM: 84.7
Min nTPM: 63.2
Sample A Female 84.7
Sample B Female 63.2
Sample C Male 76.1
Sample D Male 65.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 37.5
Min nTPM: 32.0
Sample A Male 37.5
Sample B Male 33.5
Sample C Female 32.0
Sample D Female 34.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
69201534 Antisense, RP_050317_03_B02, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.