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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:261.8 nTPM
HPA:261.8 nTPM
GTEx:215.8 nTPM
FANTOM5:533.1 Scaled Tags Per Million
Pig:164.2 nTPM
Mouse:438.3 nTPM
Allen mouse:14.5 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 261.8
Sample id Sample description nTPM
Amygdala
nTPM: 249.0
2814 Male, age 76, right hemisphere 254.3
2695 Female, age 67, right hemisphere 251.3
2514 Male, age 75, right hemisphere 249.1
1987 Female, age 91, left hemisphere 248.6
2517 Female, age 94, left hemisphere 241.9
Basal amygdala
nTPM: 254.2
2609 Male, age 75, right hemisphere 277.3
2243 Female, age 91, right hemisphere 268.4
2110 Male, age 80, left hemisphere 249.2
2685 Female, age 94, left hemisphere 245.9
2827 Female, age 67, right hemisphere 245.6
1955 Male, age 76, both hemispheres 238.9
Central amygdala
nTPM: 261.8
2515 Male, age 75, right hemisphere 285.6
2826 Female, age 94, left hemisphere 260.6
2701 Female, age 91, right hemisphere 260.1
2239 Male, age 80, left hemisphere 253.1
1905 Male, age 76, both hemispheres 249.6
Corticomedial amygdala
nTPM: 256.0
2829 Male, age 80, left hemisphere 283.4
2428 Male, age 75, right hemisphere 282.1
2242 Female, age 91, right hemisphere 252.4
2429 Female, age 94, left hemisphere 244.2
2535 Female, age 67, right hemisphere 244.0
2240 Male, age 76, both hemispheres 229.7
Lateral amygdala
nTPM: 251.1
2516 Male, age 75, right hemisphere 262.4
2534 Female, age 94, left hemisphere 258.9
2255 Female, age 91, right hemisphere 254.1
2830 Female, age 67, right hemisphere 251.6
1883 Male, age 76, both hemispheres 244.0
2256 Male, age 80, left hemisphere 235.4
Stria terminalis, bed nucleus
nTPM: 248.6
2486 Female, age 94, both hemispheres 256.9
1974 Female, age 91, both hemispheres 254.5
2201 Male, age 74, unknown 234.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 215.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 215.8
Samples: 152

Max nTPM: 847.1
Min nTPM: 102.0
Std nTPM: 97.2
Median nTPM: 191.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 847.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 666.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 560.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 475.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 462.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 399.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 395.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 393.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 364.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 360.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 346.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 335.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 334.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 327.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 306.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 306.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 303.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 301.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 299.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 294.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 289.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 286.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 279.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 273.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 271.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 269.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 266.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 265.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 263.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 259.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 253.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 247.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 241.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 240.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 239.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 239.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 238.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 236.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 235.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 234.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 231.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 231.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 231.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 230.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 229.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 228.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 227.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 227.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 227.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 225.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 224.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 223.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 220.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 219.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 218.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 218.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 217.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 216.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 215.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 214.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 212.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 212.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 209.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 208.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 207.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 207.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 201.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 201.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 200.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 200.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 195.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 195.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 195.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 193.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 192.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 192.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 191.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 191.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 190.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 189.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 186.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 184.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 183.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 183.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 183.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 182.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 181.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 179.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 179.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 179.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 177.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 176.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 175.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 174.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 172.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 171.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 171.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 171.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 170.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 170.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 167.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 166.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 165.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 165.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 164.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 164.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 164.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 163.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 162.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 161.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 161.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 160.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 159.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 159.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 156.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 156.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 156.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 154.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 153.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 153.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 151.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 150.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 150.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 149.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 148.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 146.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 144.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 143.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 143.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 142.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 142.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 141.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 141.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 141.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 140.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 140.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 139.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 139.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 138.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 138.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 133.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 131.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 130.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 129.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 128.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 126.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 121.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 121.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 119.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 118.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 113.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 102.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 533.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 533.1
FF:10151-102I7 76 years, female 533.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 164.2
Pig sample Sample description nTPM
Amygdala
nTPM: 164.2
Samples: 4

Max nTPM: 197.6
Min nTPM: 142.6
Sample A Female 197.6
Sample B Female 142.6
Sample C Male 166.5
Sample D Male 150.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 438.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 438.3
Samples: 4

Max nTPM: 445.4
Min nTPM: 428.8
Sample A Male 445.4
Sample B Male 428.8
Sample C Female 437.1
Sample D Female 441.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 14.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.5
1051 Antisense, RP_Baylor_103071, Mouse strain C57BL/6J (56 days, male) 14.5
1052 Antisense, RP_Baylor_103071, Mouse strain C57BL/6J (56 days, male) 12.5

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