MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:270.8 nTPM
HPA:270.8 nTPM
GTEx:224.2 nTPM
FANTOM5:380.8 Scaled Tags Per Million
Pig:187.8 nTPM
Mouse:269.5 nTPM
Allen mouse:9.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 270.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 235.4
2586 Male, age 75, left hemisphere 274.0
2019 Male, age 18, unknown 243.7
2666 Male, age 74, left hemisphere 243.3
1827 Male, age 72, unknown 242.7
2828 Female, age 72, unknown 241.6
1870 Female, age 42, unknown 229.6
2411 Female, age 72, unknown 225.2
1833 Male, age 53, unknown 224.4
1830 Male, age 51, unknown 224.0
2219 Male, age 76, both hemispheres 205.7
Dorsal raphe nucleus
nTPM: 236.3
2750 Male, age 76, both hemispheres 245.1
2047 Male, age 72, unknown 243.5
2298 Female, age 72, unknown 238.4
1828 Male, age 53, unknown 231.2
2016 Female, age 72, unknown 223.3
Inferior colliculus
nTPM: 236.7
1848 Female, age 42, unknown 241.3
2849 Male, age 72, unknown 236.8
1890 Male, age 53, unknown 236.4
2097 Female, age 72, unknown 232.5
Median raphe nucleus
nTPM: 270.8
2220 Male, age 76, midline 270.8
Pedunculopontine tegmental nucleus
nTPM: 218.7
2334 Male, age 80, both hemispheres 228.4
1921 Female, age 85, both hemispheres 223.5
2338 Male, age 61, both hemispheres 204.2
Periaquaductal grey, anterior
nTPM: 244.3
2502 Female, age 75, unknown 250.2
1795 Male, age 51, unknown 241.9
1947 Male, age 18, unknown 240.8
Periaquaductal grey, dorsal
nTPM: 249.5
2850 Male, age 76, both hemispheres 294.4
1840 Male, age 53, unknown 240.3
1831 Male, age 72, unknown 234.9
2464 Female, age 72, unknown 228.4
Periaquaductal grey, lateral
nTPM: 248.2
2140 Male, age 76, both hemispheres 290.1
2053 Male, age 18, unknown 234.1
2272 Male, age 74, both hemispheres 220.4
Pretectal area
nTPM: 246.8
2007 Male, age 72, unknown 265.8
1817 Female, age 42, unknown 265.0
2316 Male, age 76, right hemisphere 261.5
2667 Female, age 75, unknown 257.2
1816 Male, age 51, unknown 256.6
1944 Female, age 72, unknown 253.1
1815 Male, age 53, unknown 245.4
2224 Female, age 72, unknown 235.8
2825 Male, age 18, unknown 234.6
2407 Male, age 75, both hemispheres 223.8
2273 Male, age 74, both hemispheres 216.4
Red nucleus
nTPM: 235.5
1821 Female, age 72, unknown 250.9
1954 Female, age 42, unknown 243.3
2785 Male, age 18, unknown 240.9
2588 Male, age 74, left hemisphere 236.4
1904 Male, age 53, unknown 236.3
2227 Male, age 72, unknown 235.8
2769 Male, age 72, unknown 235.4
1865 Male, age 51, unknown 235.0
2823 Male, age 76, right hemisphere 234.4
2503 Female, age 72, unknown 231.1
2584 Male, age 75, left hemisphere 225.4
2725 Female, age 75, unknown 221.0
Substantia nigra
nTPM: 245.8
2665 Male, age 74, both hemispheres 274.4
1851 Male, age 51, unknown 255.0
1916 Female, age 42, unknown 253.9
1941 Male, age 53, unknown 247.4
2699 Male, age 18, unknown 245.4
1889 Female, age 72, unknown 245.3
2590 Female, age 75, unknown 241.8
2583 Male, age 75, right hemisphere 233.4
2241 Male, age 72, unknown 233.3
2409 Female, age 72, unknown 227.6
Superior colliculus
nTPM: 235.9
1796 Male, age 53, unknown 259.7
2087 Female, age 72, unknown 244.9
2261 Male, age 18, unknown 242.7
2668 Female, age 75, unknown 238.4
1895 Male, age 76, right hemisphere 234.4
1839 Male, age 51, unknown 234.2
2664 Male, age 75, both hemispheres 233.4
2587 Male, age 74, left hemisphere 229.0
1995 Male, age 72, unknown 224.6
1913 Female, age 42, unknown 217.5
Ventral tegmental area
nTPM: 239.6
2218 Male, age 76, both hemispheres 249.5
2223 Female, age 72, unknown 244.0
1915 Female, age 42, unknown 240.0
2021 Male, age 53, unknown 235.3
1942 Male, age 51, unknown 235.0
2410 Female, age 72, unknown 233.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 224.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 224.2
Samples: 139

Max nTPM: 804.5
Min nTPM: 94.6
Std nTPM: 129.3
Median nTPM: 180.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 804.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 688.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 600.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 564.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 536.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 530.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 519.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 505.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 502.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 494.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 489.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 380.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 380.8
FF:10158-103A5 76 years, female 380.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 187.8
Pig sample Sample description nTPM
Midbrain
nTPM: 176.9
Samples: 4

Max nTPM: 238.9
Min nTPM: 152.5
Sample A Female 163.0
Sample B Female 152.5
Sample C Male 238.9
Sample D Male 153.0
Periaqueductal gray
nTPM: 146.5
Samples: 3

Max nTPM: 164.6
Min nTPM: 132.1
Sample B Female 142.9
Sample C Male 164.6
Sample D Male 132.1
Substantia nigra
nTPM: 171.0
Samples: 4

Max nTPM: 174.7
Min nTPM: 166.0
Sample A Female 166.0
Sample B Female 174.7
Sample C Male 174.2
Sample D Male 169.1
Superior colliculi
nTPM: 187.8
Samples: 4

Max nTPM: 197.8
Min nTPM: 172.4
Sample A Female 197.8
Sample B Female 172.4
Sample C Male 194.4
Sample D Male 186.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 269.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 269.5
Samples: 4

Max nTPM: 278.3
Min nTPM: 258.0
Sample A Male 275.3
Sample B Male 266.3
Sample C Female 258.0
Sample D Female 278.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.7
1052 Antisense, RP_Baylor_103071, Mouse strain C57BL/6J (56 days, male) 9.7
1051 Antisense, RP_Baylor_103071, Mouse strain C57BL/6J (56 days, male) 7.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.