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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:178.7 nTPM
HPA:178.7 nTPM
GTEx:231.2 nTPM
FANTOM5:105.0 Scaled Tags Per Million
Pig:119.8 nTPM
Mouse:280.7 nTPM
Allen mouse:11.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 178.7
Sample id Sample description nTPM
Amygdala
nTPM: 137.2
2517 Female, age 94, left hemisphere 170.8
2695 Female, age 67, right hemisphere 138.5
2514 Male, age 75, right hemisphere 127.8
2814 Male, age 76, right hemisphere 125.0
1987 Female, age 91, left hemisphere 123.8
Basal amygdala
nTPM: 178.7
2685 Female, age 94, left hemisphere 226.8
2110 Male, age 80, left hemisphere 183.5
2243 Female, age 91, right hemisphere 177.9
2827 Female, age 67, right hemisphere 167.8
2609 Male, age 75, right hemisphere 159.4
1955 Male, age 76, both hemispheres 156.7
Central amygdala
nTPM: 149.6
2826 Female, age 94, left hemisphere 208.5
2239 Male, age 80, left hemisphere 164.6
2515 Male, age 75, right hemisphere 134.7
2701 Female, age 91, right hemisphere 121.9
1905 Male, age 76, both hemispheres 118.4
Corticomedial amygdala
nTPM: 165.7
2429 Female, age 94, left hemisphere 186.1
2829 Male, age 80, left hemisphere 181.0
2535 Female, age 67, right hemisphere 176.1
2242 Female, age 91, right hemisphere 156.8
2240 Male, age 76, both hemispheres 149.4
2428 Male, age 75, right hemisphere 144.6
Lateral amygdala
nTPM: 158.0
2534 Female, age 94, left hemisphere 220.6
2256 Male, age 80, left hemisphere 179.4
2516 Male, age 75, right hemisphere 142.7
2830 Female, age 67, right hemisphere 140.4
2255 Female, age 91, right hemisphere 137.4
1883 Male, age 76, both hemispheres 127.6
Stria terminalis, bed nucleus
nTPM: 134.5
1974 Female, age 91, both hemispheres 143.8
2486 Female, age 94, both hemispheres 141.6
2201 Male, age 74, unknown 118.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 231.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 231.2
Samples: 152

Max nTPM: 704.4
Min nTPM: 74.8
Std nTPM: 92.7
Median nTPM: 218.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 704.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 519.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 415.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 410.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 410.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 407.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 404.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 399.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 393.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 390.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 384.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 378.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 371.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 360.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 352.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 349.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 341.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 340.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 338.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 337.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 336.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 334.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 329.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 327.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 316.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 316.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 313.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 313.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 312.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 309.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 306.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 299.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 297.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 293.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 289.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 289.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 287.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 287.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 286.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 274.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 274.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 274.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 273.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 271.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 271.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 270.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 265.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 265.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 263.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 261.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 257.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 256.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 248.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 247.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 246.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 245.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 245.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 244.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 244.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 242.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 236.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 235.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 232.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 231.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 230.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 230.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 229.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 229.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 228.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 228.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 227.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 225.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 225.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 225.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 219.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 218.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 217.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 216.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 216.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 216.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 214.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 210.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 205.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 202.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 202.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 200.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 197.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 195.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 194.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 190.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 190.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 190.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 190.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 188.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 187.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 186.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 184.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 182.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 181.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 180.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 177.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 176.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 176.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 176.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 175.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 174.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 173.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 171.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 167.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 166.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 165.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 165.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 163.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 163.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 162.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 158.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 157.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 156.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 156.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 156.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 155.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 155.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 153.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 150.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 150.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 148.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 147.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 146.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 145.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 144.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 143.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 142.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 142.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 133.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 131.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 129.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 128.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 128.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 127.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 125.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 124.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 122.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 119.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 117.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 109.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 106.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 106.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 104.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 104.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 102.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 85.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 74.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 105.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 105.0
FF:10151-102I7 76 years, female 105.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 119.8
Pig sample Sample description nTPM
Amygdala
nTPM: 119.8
Samples: 4

Max nTPM: 136.1
Min nTPM: 90.0
Sample A Female 136.1
Sample B Female 118.0
Sample C Male 135.2
Sample D Male 90.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 280.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 280.7
Samples: 4

Max nTPM: 294.6
Min nTPM: 244.4
Sample A Male 292.4
Sample B Male 291.3
Sample C Female 244.4
Sample D Female 294.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.8
32576 Antisense, RP_040324_01_D11, Mouse strain C57BL/6J (56 days, male) 17.2
71608206 Antisense, RP_050927_01_B02, Mouse strain C57BL/6J (56 days, male) 6.5

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