MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:148.7 nTPM
HPA:148.7 nTPM
GTEx:124.1 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:225.0 nTPM
Mouse:150.4 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 148.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.7
2586 Male, age 75, left hemisphere 133.2
1833 Male, age 53, unknown 132.1
2666 Male, age 74, left hemisphere 129.9
1870 Female, age 42, unknown 129.3
2411 Female, age 72, unknown 128.1
1830 Male, age 51, unknown 126.9
2219 Male, age 76, both hemispheres 124.6
2828 Female, age 72, unknown 123.2
1827 Male, age 72, unknown 119.5
2019 Male, age 18, unknown 109.9
Dorsal raphe nucleus
nTPM: 131.0
2047 Male, age 72, unknown 147.7
2750 Male, age 76, both hemispheres 134.6
2298 Female, age 72, unknown 131.1
1828 Male, age 53, unknown 126.8
2016 Female, age 72, unknown 114.9
Inferior colliculus
nTPM: 117.7
2849 Male, age 72, unknown 125.1
1848 Female, age 42, unknown 124.0
2097 Female, age 72, unknown 111.7
1890 Male, age 53, unknown 109.9
Median raphe nucleus
nTPM: 148.7
2220 Male, age 76, midline 148.7
Pedunculopontine tegmental nucleus
nTPM: 120.1
1921 Female, age 85, both hemispheres 123.8
2334 Male, age 80, both hemispheres 122.8
2338 Male, age 61, both hemispheres 113.9
Periaquaductal grey, anterior
nTPM: 129.1
1947 Male, age 18, unknown 141.3
2502 Female, age 75, unknown 129.2
1795 Male, age 51, unknown 116.8
Periaquaductal grey, dorsal
nTPM: 119.1
1840 Male, age 53, unknown 134.0
2464 Female, age 72, unknown 118.1
2850 Male, age 76, both hemispheres 113.6
1831 Male, age 72, unknown 110.7
Periaquaductal grey, lateral
nTPM: 109.1
2053 Male, age 18, unknown 110.8
2140 Male, age 76, both hemispheres 109.7
2272 Male, age 74, both hemispheres 106.6
Pretectal area
nTPM: 114.5
2825 Male, age 18, unknown 122.2
1817 Female, age 42, unknown 119.7
2224 Female, age 72, unknown 117.1
2667 Female, age 75, unknown 116.9
1815 Male, age 53, unknown 116.7
1816 Male, age 51, unknown 115.9
2007 Male, age 72, unknown 115.6
2407 Male, age 75, both hemispheres 112.5
1944 Female, age 72, unknown 111.8
2316 Male, age 76, right hemisphere 106.9
2273 Male, age 74, both hemispheres 103.8
Red nucleus
nTPM: 112.8
2584 Male, age 75, left hemisphere 118.4
2769 Male, age 72, unknown 116.6
2503 Female, age 72, unknown 116.1
2588 Male, age 74, left hemisphere 115.8
1821 Female, age 72, unknown 115.6
2227 Male, age 72, unknown 113.3
2725 Female, age 75, unknown 111.9
1954 Female, age 42, unknown 111.1
1865 Male, age 51, unknown 110.8
1904 Male, age 53, unknown 110.4
2785 Male, age 18, unknown 109.8
2823 Male, age 76, right hemisphere 103.7
Substantia nigra
nTPM: 129.7
1916 Female, age 42, unknown 152.1
2665 Male, age 74, both hemispheres 149.4
1851 Male, age 51, unknown 145.1
2699 Male, age 18, unknown 131.9
2409 Female, age 72, unknown 124.2
1889 Female, age 72, unknown 122.7
2241 Male, age 72, unknown 120.3
2583 Male, age 75, right hemisphere 117.8
2590 Female, age 75, unknown 117.6
1941 Male, age 53, unknown 115.9
Superior colliculus
nTPM: 116.4
1796 Male, age 53, unknown 124.2
2668 Female, age 75, unknown 123.8
2664 Male, age 75, both hemispheres 123.6
1895 Male, age 76, right hemisphere 116.0
1839 Male, age 51, unknown 114.1
1913 Female, age 42, unknown 113.8
2087 Female, age 72, unknown 113.0
2261 Male, age 18, unknown 112.5
2587 Male, age 74, left hemisphere 112.3
1995 Male, age 72, unknown 111.0
Ventral tegmental area
nTPM: 137.0
2223 Female, age 72, unknown 146.8
1915 Female, age 42, unknown 144.4
1942 Male, age 51, unknown 135.9
2410 Female, age 72, unknown 135.4
2021 Male, age 53, unknown 130.9
2218 Male, age 76, both hemispheres 128.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 124.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 124.1
Samples: 139

Max nTPM: 223.6
Min nTPM: 75.5
Std nTPM: 29.0
Median nTPM: 120.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 223.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 216.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 203.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 198.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 193.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 192.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 187.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 187.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 183.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 176.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 169.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.9
FF:10158-103A5 76 years, female 43.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 225.0
Pig sample Sample description nTPM
Midbrain
nTPM: 216.1
Samples: 4

Max nTPM: 383.5
Min nTPM: 127.2
Sample A Female 383.5
Sample B Female 198.4
Sample C Male 155.2
Sample D Male 127.2
Periaqueductal gray
nTPM: 159.5
Samples: 3

Max nTPM: 168.8
Min nTPM: 148.3
Sample B Female 168.8
Sample C Male 161.4
Sample D Male 148.3
Substantia nigra
nTPM: 225.0
Samples: 4

Max nTPM: 252.9
Min nTPM: 165.9
Sample A Female 252.9
Sample B Female 165.9
Sample C Male 238.7
Sample D Male 242.4
Superior colliculi
nTPM: 171.4
Samples: 4

Max nTPM: 197.7
Min nTPM: 121.2
Sample A Female 196.2
Sample B Female 121.2
Sample C Male 170.3
Sample D Male 197.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 150.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 150.4
Samples: 4

Max nTPM: 157.4
Min nTPM: 145.5
Sample A Male 157.4
Sample B Male 146.2
Sample C Female 145.5
Sample D Female 152.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
32576 Antisense, RP_040324_01_D11, Mouse strain C57BL/6J (56 days, male) 11.3
71608206 Antisense, RP_050927_01_B02, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.