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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:135.6 nTPM
HPA:135.6 nTPM
FANTOM5:45.6 Scaled Tags Per Million
Pig:244.9 nTPM
Allen mouse:4.6 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 135.6
Sample id Sample description nTPM
Area postrema
nTPM: 121.8
2799 Male, age 61, both hemispheres 137.6
2054 Male, age 76, both hemispheres 116.0
2306 Male, age 80, both hemispheres 111.7
Cuneate nuclei
nTPM: 109.1
2381 Male, age 80, both hemispheres 111.2
2376 Male, age 61, both hemispheres 109.2
2131 Male, age 76, both hemispheres 106.8
Dorsal medullary reticular nucleus
nTPM: 130.2
2040 Female, age 85, both hemispheres 148.5
2373 Male, age 61, both hemispheres 125.1
2088 Male, age 76, both hemispheres 117.0
Dorsal motor vagal complex
nTPM: 130.1
2133 Female, age 91, both hemispheres 142.9
2000 Male, age 74, unknown 142.4
2797 Male, age 61, both hemispheres 136.9
2844 Male, age 55, unknown 134.9
2813 Female, age 72, unknown 131.2
2643 Male, age 74, both hemispheres 126.9
2185 Male, age 76, both hemispheres 119.0
2807 Female, age 85, both hemispheres 106.7
Gigantocellular reticular nuclei, medullary
nTPM: 114.9
1876 Female, age 85, both hemispheres 125.2
2387 Female, age 91, both hemispheres 117.9
2022 Male, age 76, right hemisphere 115.1
2314 Male, age 61, both hemispheres 110.8
2310 Male, age 80, both hemispheres 110.6
2462 Male, age 74, both hemispheres 110.0
Gigantocellular reticular nuclei, pars
nTPM: 114.7
2084 Female, age 85, both hemispheres 135.1
2336 Male, age 61, both hemispheres 121.5
2168 Male, age 76, both hemispheres 111.0
2330 Male, age 80, both hemispheres 104.5
2706 Male, age 80, both hemispheres 101.3
Inferior olive
nTPM: 112.7
2628 Female, age 91, both hemispheres 125.3
2563 Male, age 74, both hemispheres 112.9
2178 Male, age 61, both hemispheres 111.7
2379 Male, age 80, both hemispheres 107.9
2085 Female, age 85, both hemispheres 106.0
Lateral medullary reticular nucleus
nTPM: 114.9
2190 Female, age 85, both hemispheres 117.5
2044 Male, age 76, both hemispheres 117.4
2852 Male, age 80, both hemispheres 116.2
2804 Female, age 91, both hemispheres 115.2
2374 Male, age 61, both hemispheres 114.2
2305 Male, age 74, both hemispheres 108.7
Medial vestibular nucleus
nTPM: 124.5
2134 Male, age 76, both hemispheres 142.2
2624 Male, age 61, both hemispheres 131.8
2803 Female, age 91, both hemispheres 129.2
2093 Male, age 80, both hemispheres 120.4
2801 Male, age 74, both hemispheres 119.3
2743 Female, age 85, both hemispheres 104.0
Motor hypoglossal nucleus
nTPM: 135.6
2461 Male, age 61, both hemispheres 161.9
2132 Female, age 85, both hemispheres 133.6
2125 Female, age 91, both hemispheres 133.1
2182 Male, age 80, both hemispheres 131.9
2277 Male, age 76, both hemispheres 117.3
Nucleus ambiguus
nTPM: 126.4
2096 Female, age 85, both hemispheres 140.7
2071 Male, age 76, both hemispheres 112.1
Nucleus cuneatus
nTPM: 117.1
2562 Male, age 61, both hemispheres 126.3
2805 Female, age 91, both hemispheres 125.7
2564 Male, age 74, both hemispheres 119.3
2100 Male, age 76, both hemispheres 112.9
2808 Female, age 85, both hemispheres 110.8
2380 Male, age 80, both hemispheres 107.3
Nucleus gracilis
nTPM: 113.8
2627 Male, age 74, both hemispheres 117.8
2299 Female, age 85, both hemispheres 113.0
2382 Male, age 80, both hemispheres 110.5
Nucleus raphe magnus
nTPM: 107.3
2160 Male, age 61, both hemispheres 111.9
2455 Male, age 74, both hemispheres 108.6
2051 Male, age 76, both hemispheres 108.3
2459 Female, age 91, both hemispheres 107.2
2328 Male, age 80, both hemispheres 106.8
2172 Female, age 85, both hemispheres 101.1
Nucleus raphe obscurus
nTPM: 110.6
2142 Male, age 76, midline 113.1
2800 Male, age 61, midline 109.4
2845 Female, age 85, midline 109.2
Nucleus raphe pallidus
nTPM: 114.0
2183 Male, age 80, midline 126.8
1924 Male, age 61, midline 107.7
2145 Male, age 76, midline 107.4
Nucleus tractus solitarii
nTPM: 113.3
2656 Male, age 76, both hemispheres 119.0
2191 Female, age 85, both hemispheres 115.8
2307 Male, age 80, both hemispheres 114.9
2144 Female, age 91, right hemisphere 103.6
Parvicellular reticular nuclei
nTPM: 115.3
2119 Male, age 80, both hemispheres 122.8
2095 Male, age 76, both hemispheres 115.2
2558 Male, age 74, both hemispheres 107.9
Parvicellular reticular nuclei, medullary
nTPM: 128.7
2189 Female, age 91, both hemispheres 135.1
2091 Female, age 85, both hemispheres 132.7
2181 Male, age 80, left hemisphere 118.3
Peritrigeminal nucleus
nTPM: 113.0
2067 Female, age 85, both hemispheres 115.8
2179 Male, age 61, both hemispheres 113.0
2136 Male, age 76, both hemispheres 110.2
Prepositus hypoglossal nucleus
nTPM: 109.4
2855 Female, age 85, right hemisphere 110.9
2086 Male, age 80, both hemispheres 107.9
Spinal trigeminal nucleus, caudal
nTPM: 124.6
2390 Female, age 91, both hemispheres 159.4
2308 Male, age 80, both hemispheres 117.7
2447 Male, age 76, both hemispheres 117.1
2642 Male, age 74, both hemispheres 114.4
2312 Male, age 61, both hemispheres 114.2
Spinal trigeminal nucleus, interpolar
nTPM: 134.7
2625 Male, age 61, both hemispheres 204.9
2033 Male, age 80, both hemispheres 124.6
2389 Female, age 91, both hemispheres 118.8
2386 Female, age 85, both hemispheres 114.2
2066 Male, age 76, right hemisphere 111.1
Spinal vestibular nucleus
nTPM: 127.6
2186 Female, age 91, both hemispheres 134.4
2796 Male, age 61, both hemispheres 132.3
2748 Male, age 76, both hemispheres 132.2
2780 Male, age 80, both hemispheres 126.8
2806 Female, age 85, both hemispheres 124.4
2384 Male, age 74, both hemispheres 115.7
Ventral medullary reticular nucleus
nTPM: 121.3
2060 Male, age 76, both hemispheres 133.4
2372 Male, age 61, both hemispheres 109.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 111.1
2302 Female, age 91, both hemispheres 116.0
2180 Male, age 61, both hemispheres 113.7
2741 Female, age 85, both hemispheres 113.2
1986 Male, age 76, both hemispheres 109.0
2118 Male, age 80, both hemispheres 103.6

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 45.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 45.6
FF:10038-101F2 18-64 years, mixed 68.8
FF:10155-103A2 76 years, female 45.7
FF:10174-103C3 60 years, female 22.4

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 244.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 244.9
Samples: 4

Max nTPM: 280.3
Min nTPM: 198.9
Sample A Female 220.3
Sample B Female 198.9
Sample C Male 279.9
Sample D Male 280.3

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.6
32576 Antisense, RP_040324_01_D11, Mouse strain C57BL/6J (56 days, male) 5.8
71608206 Antisense, RP_050927_01_B02, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.