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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:353.5 nTPM
GTEx:171.8 nTPM
FANTOM5:321.0 Scaled Tags Per Million
Pig:85.7 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 353.5
Sample id Sample description nTPM
Substantia nigra
nTPM: 353.5
1851 Male, age 51, unknown 479.6
2583 Male, age 75, right hemisphere 476.9
2699 Male, age 18, unknown 441.0
2665 Male, age 74, both hemispheres 422.3
2590 Female, age 75, unknown 409.2
1889 Female, age 72, unknown 338.3
1916 Female, age 42, unknown 305.8
2409 Female, age 72, unknown 255.3
1941 Male, age 53, unknown 254.4
2241 Male, age 72, unknown 152.5

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 171.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 171.8
Samples: 139

Max nTPM: 747.7
Min nTPM: 46.6
Std nTPM: 106.0
Median nTPM: 137.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 747.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 542.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 471.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 452.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 445.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 434.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 391.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 373.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 373.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 361.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 339.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 321.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 314.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 310.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 303.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 300.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 282.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 270.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 269.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 266.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 262.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 250.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 249.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 238.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 229.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 228.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 225.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 225.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 222.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 220.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 212.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 212.4
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 208.1
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 203.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 201.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 201.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 200.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 199.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 198.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 195.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 194.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 191.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 190.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 190.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 188.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 187.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 184.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 180.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 178.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 176.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 175.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 175.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 174.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 171.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 168.8
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 168.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 168.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 167.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 162.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 159.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 158.8
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 153.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 151.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 150.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 145.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 141.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 140.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 139.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 138.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 137.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 137.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 135.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 135.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 132.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 131.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 129.9
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 129.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 126.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 125.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 125.0
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 124.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 124.1
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 123.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 122.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 121.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 121.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 121.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 120.8
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 117.9
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 116.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 116.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 113.9
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 113.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 112.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 109.7
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 109.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 109.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 109.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 108.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 108.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 105.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 104.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 104.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 103.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 101.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 100.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 98.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 97.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 97.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 96.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 96.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 95.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 94.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 92.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 91.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 91.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 90.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 89.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 86.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 84.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 84.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 84.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 83.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 80.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 77.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 76.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 75.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 73.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 73.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 73.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 73.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 73.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 68.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 67.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 65.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 61.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 57.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 55.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 46.6
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 321.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 321.0
FF:10158-103A5 76 years, female 321.0

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 85.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.7
Samples: 4

Max nTPM: 121.3
Min nTPM: 59.1
Sample A Female 92.3
Sample B Female 59.1
Sample C Male 69.9
Sample D Male 121.3

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