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HCFC1R1
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM EPIDIDYMIS
ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:253.2 nTPM
FANTOM5:240.6 Scaled Tags Per Million
Pig:35.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA059647
Glial cells Not detected
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 253.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 253.2
Samples: 246

Max nTPM: 587.7
Min nTPM: 98.1
Std nTPM: 74.9
Median nTPM: 248.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 587.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 549.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 497.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 473.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 451.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 438.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 425.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 424.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 412.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 411.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 411.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 401.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 384.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 374.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 372.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 369.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 366.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 359.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 358.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 355.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 352.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 350.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 349.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 345.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 343.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 342.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 340.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 331.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 330.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 330.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 328.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 327.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 327.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 325.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 324.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 321.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 319.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 317.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 316.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 316.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 315.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 314.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 312.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 312.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 310.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 309.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 307.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 303.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 303.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 302.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 301.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 300.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 298.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 297.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 296.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 295.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 295.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 294.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 293.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 292.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 291.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 290.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 287.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 286.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 286.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 285.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 285.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 284.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 284.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 283.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 283.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 282.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 282.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 281.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 281.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 279.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 278.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 277.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 275.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 275.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 274.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 273.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 273.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 272.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 272.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 271.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 269.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 269.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 269.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 268.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 267.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 265.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 265.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 264.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 262.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 261.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 261.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 261.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 261.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 261.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 260.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 260.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 259.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 258.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 258.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 258.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 257.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 256.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 256.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 255.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 255.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 255.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 254.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 254.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 253.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 252.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 250.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 249.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 249.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 249.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 248.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 248.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 248.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 247.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 246.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 244.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 244.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 243.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 241.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 241.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 240.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 239.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 237.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 237.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 237.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 236.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 236.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 234.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 234.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 234.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 234.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 233.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 231.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 229.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 229.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 229.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 229.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 228.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 228.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 228.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 227.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 226.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 225.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 225.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 225.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 224.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 223.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 223.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 222.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 222.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 221.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 220.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 219.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 219.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 218.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 218.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 217.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 217.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 216.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 214.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 214.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 213.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 212.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 212.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 212.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 211.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 210.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 209.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 209.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 209.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 209.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 209.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 205.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 204.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 204.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 203.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 203.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 202.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 202.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 201.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 200.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 198.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 198.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 196.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 196.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 195.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 195.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 194.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 192.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 192.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 191.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 191.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 191.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 190.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 189.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 188.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 188.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 187.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 187.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 186.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 185.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 182.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 182.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 182.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 180.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 180.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 180.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 178.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 177.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 176.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 175.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 175.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 173.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 169.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 168.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 163.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 163.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 151.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 151.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 150.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 147.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 146.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 143.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 141.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 135.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 135.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 133.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 129.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 127.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 124.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 123.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 115.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 113.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 104.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 104.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 98.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 240.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 240.6
FF:10164-103B2 76 years, female 240.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.7
Pig sample Sample description nTPM
Caudate
nTPM: 35.7
Samples: 4

Max nTPM: 48.2
Min nTPM: 27.9
Sample A Female 29.4
Sample B Female 37.4
Sample C Male 48.2
Sample D Male 27.9

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