HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		122.837
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:80.5 nTPM
HPA:80.5 nTPM
GTEx:45.3 nTPM
FANTOM5:19.4 Scaled Tags Per Million
Mouse:80.9 nTPM
Allen mouse:7.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA013998Antibody HPA014144Antibody CAB068211
Glial cells Not detectedNot detectedMedium
Neuronal cells MediumMediumMedium







HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA013998
Hippocampal formation mean intensity 122.837
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 77.154
Molecular layer of the dentate gyrus 96.726
Granular dentate gyrus 28.122
CA1 - oriens layer 44.162
CA1 - pyramidal layer 58.951
CA1 - radiatum layer 37.188
CA2 - oriens layer 97.672
CA2 - pyramidal layer 122.837
CA2 - radiatum layer 104.130
CA3 - oriens layer 55.759
CA3 - pyramidal layer 45.316
CA3 - radiatum layer 57.748
Stratum lucidum 38.352
Lacunosum moleculare 63.550
Subiculum 55.139

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 80.5
Sample id Sample description nTPM
Hippocampus
nTPM: 31.0
2621 Female, age 67, right hemisphere 39.5
2529 Female, age 94, left hemisphere 30.8
1855 Male, age 76, left hemisphere 30.5
1911 Female, age 85, right hemisphere 30.0
2148 Female, age 91, left hemisphere 28.7
1898 Male, age 80, left hemisphere 26.5
Dentate gyrus
nTPM: 32.8
1927 Female, age 91, both hemispheres 42.1
2246 Female, age 85, both hemispheres 38.6
2528 Male, age 74, both hemispheres 31.1
2531 Female, age 67, both hemispheres 29.7
2010 Male, age 76, both hemispheres 28.1
2530 Female, age 94, left hemisphere 27.1
Entorhinal gyrus
nTPM: 38.2
2764 Male, age 80, right hemisphere 46.0
2686 Male, age 75, right hemisphere 44.5
1787 Male, age 76, left hemisphere 44.2
2117 Female, age 91, right hemisphere 33.4
1938 Female, age 85, left hemisphere 31.5
2613 Female, age 94, left hemisphere 29.8
Hippocampus, CA1
nTPM: 37.9
2045 Male, age 76, both hemispheres 42.2
2082 Female, age 91, right hemisphere 41.7
2749 Male, age 80, left hemisphere 41.0
1873 Female, age 85, both hemispheres 34.1
2527 Male, age 74, both hemispheres 30.5
Hippocampus, CA2
nTPM: 35.5
1940 Female, age 85, left hemisphere 49.2
2113 Female, age 91, right hemisphere 40.7
1963 Male, age 80, left hemisphere 37.6
1892 Male, age 76, both hemispheres 36.8
2437 Female, age 94, left hemisphere 25.8
2249 Male, age 74, both hemispheres 22.6
Hippocampus, CA3
nTPM: 29.5
2861 Female, age 67, both hemispheres 37.6
1867 Male, age 76, both hemispheres 31.3
2436 Male, age 74, both hemispheres 28.0
2137 Male, age 80, left hemisphere 27.3
1891 Female, age 85, both hemispheres 26.8
2620 Female, age 94, left hemisphere 25.9
Parahippocampal cortex
nTPM: 53.9
2693 Female, age 94, both hemispheres 79.7
2245 Female, age 91, both hemispheres 78.7
2250 Female, age 67, right hemisphere 67.9
1933 Female, age 85, both hemispheres 64.8
2622 Female, age 67, right hemisphere 48.4
2532 Female, age 72, left hemisphere 45.8
2018 Male, age 76, both hemispheres 45.7
1850 Male, age 80, both hemispheres 42.6
1990 Female, age 91, right hemisphere 34.4
2692 Male, age 74, both hemispheres 30.7
Perirhinal gyrus
nTPM: 80.5
2521 Female, age 94, right hemisphere 110.3
1847 Female, age 91, left hemisphere 81.7
2848 Male, age 76, right hemisphere 73.0
1794 Male, age 80, right hemisphere 68.9
1841 Female, age 85, right hemisphere 68.9
Subiculum
nTPM: 31.4
1977 Female, age 85, both hemispheres 50.1
2619 Male, age 74, both hemispheres 40.6
2042 Male, age 76, both hemispheres 26.1
1901 Male, age 80, both hemispheres 25.1
2729 Female, age 91, right hemisphere 24.6
2438 Female, age 94, left hemisphere 22.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 45.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.3
Samples: 197

Max nTPM: 345.0
Min nTPM: 6.8
Std nTPM: 38.3
Median nTPM: 36.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 345.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 208.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 201.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 198.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 161.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 156.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 152.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 114.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 113.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 96.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 94.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 19.4
FF:10153-102I9 76 years, female 22.0
FF:10169-103B7 60 years, female 16.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 80.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 63.5
Samples: 4

Max nTPM: 90.0
Min nTPM: 42.5
Sample A Male 42.5
Sample B Male 47.6
Sample C Female 73.8
Sample D Female 90.0
Hippocampal formation
nTPM: 80.9
Samples: 4

Max nTPM: 88.7
Min nTPM: 68.1
Sample A Male 83.6
Sample B Male 68.1
Sample C Female 83.3
Sample D Female 88.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.1
73788010 Antisense, RP_051213_01_A05, Mouse strain C57BL/6J (56 days, male) 8.1
69671905 Antisense, RP_050428_02_F01, Mouse strain C57BL/6J (56 days, male) 6.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.