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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:50.8 nTPM
GTEx:50.8 nTPM
FANTOM5:98.3 Scaled Tags Per Million
Pig:48.1 nTPM
Mouse:62.4 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 50.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 50.8
Samples: 105

Max nTPM: 121.9
Min nTPM: 6.5
Std nTPM: 23.2
Median nTPM:
218_1 71 years, female 121.9
352_1 62 years, male 102.6
356_1 87 years, female 100.0
350_1 84 years, female 89.0
354_1 81 years, female 87.8
351_1 91 years, male 84.5
319_1 81 years, male 83.2
293_1 68 years, female 83.0
506_1 65 years, male 83.0
243_1 75 years, male 82.8
163_1 78 years, male 80.8
452_1 88 years, female 80.8
394_1 75 years, female 78.4
320_1 89 years, female 78.2
353_1 82 years, female 77.8
376_1 75 years, female 77.3
355_1 70 years, female 76.8
177_1 74 years, male 75.8
237_1 82 years, male 75.1
347_1 72 years, male 73.9
377_1 82 years, female 71.6
172_1 72 years, female 71.4
322_1 76 years, male 70.5
99_1 64 years, male 70.4
335_1 73 years, female 70.1
379_1 60 years, male 70.0
317_1 60 years, male 69.7
447_1 81 years, male 68.9
386_1 76 years, male 68.4
349_1 83 years, male 67.6
318_1 68 years, male 67.2
321_1 62 years, female 66.0
173_1 67 years, male 65.6
292_1 71 years, male 65.2
295_1 61 years, female 62.6
375_1 74 years, female 61.5
503_1 68 years, male 61.2
251_1 78 years, male 59.6
41_1 94 years, female 58.4
406_1 79 years, male 58.0
286_1 68 years, female 56.1
264_1 73 years, female 56.0
404_1 82 years, female 55.7
425_1 59 years, female 55.5
316_1 62 years, male 54.9
189_1 76 years, male 54.5
384_1 83 years, male 54.4
291_1 76 years, male 52.8
517_1 88 years, male 51.9
389_1 86 years, female 51.6
246_1 77 years, male 51.1
266_1 85 years, male 49.4
348_1 84 years, male 49.4
480_1 63 years, male 47.8
405_1 91 years, male 47.1
526_1 61 years, male 46.0
311_1 78 years, male 45.0
17_1 71 years, male 43.9
35_1 74 years, female 43.3
4_1 88 years, female 43.0
229_1 69 years, female 42.3
396_1 62 years, male 42.2
42_1 85 years, male 41.7
217_1 76 years, male 41.1
137_1 83 years, male 41.0
2_1 77 years, female 40.6
6_1 73 years, female 40.1
120_1 70 years, female 39.8
153_1 70 years, female 39.2
115_1 83 years, male 38.8
265_1 87 years, male 38.3
313_1 79 years, female 38.3
9_1 66 years, female 35.9
468_1 89 years, male 35.5
254_1 77 years, female 35.2
499_1 55 years, female 34.9
117_1 61 years, male 34.7
145_1 84 years, male 34.6
109_1 81 years, female 34.1
518_1 75 years, female 33.8
307_1 66 years, female 33.7
126_1 63 years, male 33.4
324_1 76 years, male 31.8
288_1 66 years, female 31.6
314_1 67 years, male 31.0
18_1 88 years, male 30.5
315_1 62 years, female 30.4
81_1 67 years, male 30.0
308_1 70 years, female 24.8
139_1 64 years, female 23.6
142_1 61 years, female 23.2
119_1 70 years, female 23.0
162_1 79 years, female 20.6
495_1 57 years, female 20.3
415_1 77 years, female 20.1
32_1 67 years, male 18.5
466_1 57 years, female 17.8
43_1 64 years, female 17.6
501_1 88 years, male 15.9
414_1 84 years, female 15.6
89_1 63 years, male 15.0
149_1 88 years, male 12.1
490_1 67 years, female 12.1
413_1 59 years, female 9.6
491_1 89 years, female 6.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 98.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 98.3
FF:10030-101E3 24-65 years, mixed 98.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 48.1
Pig sample Sample description nTPM
Retina
nTPM: 48.1
Samples: 4

Max nTPM: 54.5
Min nTPM: 45.4
Sample A Female 46.0
Sample B Female 46.4
Sample C Male 54.5
Sample D Male 45.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 62.4
Mouse sample Sample description nTPM
Retina
nTPM: 62.4
Samples: 4

Max nTPM: 76.5
Min nTPM: 54.4
Sample A Male 54.4
Sample B Male 62.9
Sample C Female 76.5
Sample D Female 55.7

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