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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:87.7 nTPM
HPA:87.7 nTPM
GTEx:87.6 nTPM
FANTOM5:130.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA048315
Glandular cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 87.7
overview
Male, age 65
Small intestine sample 232
nTPM: 96
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 83.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 87.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 83.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 87.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 87.6
Samples: 187

Max nTPM: 144.1
Min nTPM: 35.4
Std nTPM: 16.7
Median nTPM: 84.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 144.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 140.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 128.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 124.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 122.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 120.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 120.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 119.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 117.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 116.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 116.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 115.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 115.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 115.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 114.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 114.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 113.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 111.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 111.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 110.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 110.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 109.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 108.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 107.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 107.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 106.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 106.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 106.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 105.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 103.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 103.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 102.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 102.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 101.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 101.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 101.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 101.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 101.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 100.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 100.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 99.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 99.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 99.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 99.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 98.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 97.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 97.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 96.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 96.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 96.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 95.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 95.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 95.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 95.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 95.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 95.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 95.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 95.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 94.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 93.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 93.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 93.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 93.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 93.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 93.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 93.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 93.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 92.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 92.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 92.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 92.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 91.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 91.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 90.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 90.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 90.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 89.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 89.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 88.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 88.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 88.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 88.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 88.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 87.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 87.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 87.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 86.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 86.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 86.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 86.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 86.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 85.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 85.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 84.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 84.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 84.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 84.0
GTEX-1192X-2526-SM-59868 50-59 years, male 83.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 83.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 83.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 83.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 82.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 82.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 82.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 82.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 82.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 82.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 82.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 81.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 81.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 81.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 81.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 81.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 81.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 81.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 81.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 81.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 80.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 80.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 80.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 80.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 80.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 79.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 79.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 78.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 78.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 78.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 78.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 78.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 77.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 77.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 77.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 77.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 77.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 77.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 77.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 77.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 76.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 76.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 76.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 76.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 75.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 75.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 74.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 74.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 74.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 74.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 74.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 73.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 73.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 73.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 73.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 73.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 73.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 72.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 72.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 72.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 72.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 72.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 72.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 71.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 71.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 71.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 71.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 71.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 70.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 69.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 69.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 69.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 69.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 69.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 68.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 67.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 66.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 64.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 64.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 64.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 64.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 62.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 62.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 61.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 61.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 59.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 59.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 59.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 54.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 35.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 130.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 130.7
FF:10024-101D6 15,40,85 years, mixed 130.7

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