MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:83.0 nTPM
HPA:83.0 nTPM
GTEx:113.0 nTPM
FANTOM5:128.1 Scaled Tags Per Million
Pig:96.0 nTPM
Mouse:141.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.8
2411 Female, age 72, unknown 78.6
2019 Male, age 18, unknown 76.9
2219 Male, age 76, both hemispheres 73.7
1827 Male, age 72, unknown 71.9
1870 Female, age 42, unknown 68.4
1833 Male, age 53, unknown 67.4
1830 Male, age 51, unknown 62.6
2828 Female, age 72, unknown 62.3
2666 Male, age 74, left hemisphere 53.9
2586 Male, age 75, left hemisphere 52.2
Dorsal raphe nucleus
nTPM: 76.5
2298 Female, age 72, unknown 90.0
2750 Male, age 76, both hemispheres 77.9
1828 Male, age 53, unknown 76.6
2047 Male, age 72, unknown 74.0
2016 Female, age 72, unknown 63.8
Inferior colliculus
nTPM: 70.7
2097 Female, age 72, unknown 85.4
1848 Female, age 42, unknown 67.4
1890 Male, age 53, unknown 67.0
2849 Male, age 72, unknown 63.2
Median raphe nucleus
nTPM: 83.0
2220 Male, age 76, midline 83.0
Pedunculopontine tegmental nucleus
nTPM: 82.0
2334 Male, age 80, both hemispheres 88.0
1921 Female, age 85, both hemispheres 80.6
2338 Male, age 61, both hemispheres 77.5
Periaquaductal grey, anterior
nTPM: 76.1
2502 Female, age 75, unknown 80.0
1795 Male, age 51, unknown 76.3
1947 Male, age 18, unknown 72.0
Periaquaductal grey, dorsal
nTPM: 68.1
2850 Male, age 76, both hemispheres 72.7
1831 Male, age 72, unknown 67.5
1840 Male, age 53, unknown 67.3
2464 Female, age 72, unknown 65.1
Periaquaductal grey, lateral
nTPM: 72.4
2272 Male, age 74, both hemispheres 85.1
2053 Male, age 18, unknown 66.8
2140 Male, age 76, both hemispheres 65.2
Pretectal area
nTPM: 78.1
1944 Female, age 72, unknown 88.8
2273 Male, age 74, both hemispheres 86.3
1817 Female, age 42, unknown 85.7
1816 Male, age 51, unknown 85.4
2007 Male, age 72, unknown 85.4
2224 Female, age 72, unknown 84.3
1815 Male, age 53, unknown 78.7
2667 Female, age 75, unknown 74.4
2825 Male, age 18, unknown 66.7
2316 Male, age 76, right hemisphere 61.7
2407 Male, age 75, both hemispheres 61.5
Red nucleus
nTPM: 67.0
1821 Female, age 72, unknown 80.8
2725 Female, age 75, unknown 74.2
2785 Male, age 18, unknown 73.2
2503 Female, age 72, unknown 70.2
1954 Female, age 42, unknown 67.5
2823 Male, age 76, right hemisphere 65.6
1865 Male, age 51, unknown 65.1
2227 Male, age 72, unknown 65.0
1904 Male, age 53, unknown 63.7
2769 Male, age 72, unknown 63.3
2588 Male, age 74, left hemisphere 59.8
2584 Male, age 75, left hemisphere 55.5
Substantia nigra
nTPM: 76.4
1916 Female, age 42, unknown 89.4
2241 Male, age 72, unknown 87.7
1941 Male, age 53, unknown 84.8
1851 Male, age 51, unknown 83.0
1889 Female, age 72, unknown 81.8
2665 Male, age 74, both hemispheres 72.1
2699 Male, age 18, unknown 70.5
2409 Female, age 72, unknown 69.7
2590 Female, age 75, unknown 66.1
2583 Male, age 75, right hemisphere 59.1
Superior colliculus
nTPM: 69.0
2087 Female, age 72, unknown 78.8
2587 Male, age 74, left hemisphere 77.8
2261 Male, age 18, unknown 74.0
1796 Male, age 53, unknown 71.9
1895 Male, age 76, right hemisphere 71.9
2668 Female, age 75, unknown 68.8
1839 Male, age 51, unknown 66.8
1913 Female, age 42, unknown 65.2
1995 Male, age 72, unknown 61.4
2664 Male, age 75, both hemispheres 53.5
Ventral tegmental area
nTPM: 77.2
2218 Male, age 76, both hemispheres 88.9
2410 Female, age 72, unknown 85.9
1915 Female, age 42, unknown 79.7
2223 Female, age 72, unknown 70.8
1942 Male, age 51, unknown 69.8
2021 Male, age 53, unknown 68.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 113.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 113.0
Samples: 139

Max nTPM: 270.3
Min nTPM: 59.6
Std nTPM: 35.2
Median nTPM: 105.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 270.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 256.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 222.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 219.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 215.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 191.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 189.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 183.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 165.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 161.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 158.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.1
FF:10158-103A5 76 years, female 128.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 96.0
Pig sample Sample description nTPM
Midbrain
nTPM: 93.0
Samples: 4

Max nTPM: 107.1
Min nTPM: 79.6
Sample A Female 107.1
Sample B Female 88.3
Sample C Male 96.8
Sample D Male 79.6
Periaqueductal gray
nTPM: 77.3
Samples: 3

Max nTPM: 93.0
Min nTPM: 66.5
Sample B Female 72.3
Sample C Male 93.0
Sample D Male 66.5
Substantia nigra
nTPM: 92.5
Samples: 4

Max nTPM: 121.6
Min nTPM: 61.4
Sample A Female 121.6
Sample B Female 88.2
Sample C Male 98.7
Sample D Male 61.4
Superior colliculi
nTPM: 96.0
Samples: 4

Max nTPM: 109.5
Min nTPM: 78.0
Sample A Female 105.6
Sample B Female 90.7
Sample C Male 109.5
Sample D Male 78.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 141.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.2
Samples: 4

Max nTPM: 146.2
Min nTPM: 138.3
Sample A Male 138.3
Sample B Male 146.2
Sample C Female 138.6
Sample D Female 141.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71724017 Antisense, RP_050921_01_D03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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