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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:299.1 nTPM
HPA:299.1 nTPM
GTEx:197.3 nTPM
FANTOM5:259.4 Scaled Tags Per Million
Pig:48.4 nTPM
Mouse:44.2 nTPM
Allen mouse:4.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 299.1
Sample id Sample description nTPM
Amygdala
nTPM: 266.7
2695 Female, age 67, right hemisphere 360.0
2814 Male, age 76, right hemisphere 353.6
2517 Female, age 94, left hemisphere 231.4
2514 Male, age 75, right hemisphere 207.0
1987 Female, age 91, left hemisphere 181.5
Basal amygdala
nTPM: 241.2
2827 Female, age 67, right hemisphere 364.3
2685 Female, age 94, left hemisphere 238.8
2609 Male, age 75, right hemisphere 227.3
2110 Male, age 80, left hemisphere 223.3
1955 Male, age 76, both hemispheres 221.5
2243 Female, age 91, right hemisphere 172.2
Central amygdala
nTPM: 262.4
2826 Female, age 94, left hemisphere 388.1
1905 Male, age 76, both hemispheres 264.2
2239 Male, age 80, left hemisphere 225.0
2701 Female, age 91, right hemisphere 221.9
2515 Male, age 75, right hemisphere 212.7
Corticomedial amygdala
nTPM: 186.9
2535 Female, age 67, right hemisphere 250.3
2428 Male, age 75, right hemisphere 206.0
2429 Female, age 94, left hemisphere 196.6
2240 Male, age 76, both hemispheres 175.9
2829 Male, age 80, left hemisphere 163.2
2242 Female, age 91, right hemisphere 129.4
Lateral amygdala
nTPM: 299.1
2830 Female, age 67, right hemisphere 438.8
2534 Female, age 94, left hemisphere 305.0
2516 Male, age 75, right hemisphere 296.8
1883 Male, age 76, both hemispheres 257.0
2256 Male, age 80, left hemisphere 255.8
2255 Female, age 91, right hemisphere 241.0
Stria terminalis, bed nucleus
nTPM: 173.3
1974 Female, age 91, both hemispheres 193.1
2201 Male, age 74, unknown 182.9
2486 Female, age 94, both hemispheres 143.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 197.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 197.3
Samples: 152

Max nTPM: 692.5
Min nTPM: 62.7
Std nTPM: 98.5
Median nTPM: 177.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 692.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 542.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 527.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 510.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 423.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 400.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 376.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 371.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 344.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 340.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 339.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 335.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 332.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 329.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 326.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 323.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 310.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 308.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 307.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 291.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 290.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 290.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 290.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 289.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 288.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 286.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 281.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 279.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 277.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 269.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 262.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 258.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 257.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 255.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 254.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 252.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 252.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 250.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 244.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 238.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 228.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 228.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 224.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 223.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 221.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 215.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 214.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 213.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 211.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 211.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 207.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 205.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 205.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 202.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 201.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 200.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 200.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 200.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 199.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 197.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 196.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 194.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 192.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 190.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 190.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 189.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 187.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 186.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 185.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 182.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 182.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 181.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 181.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 179.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 179.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 178.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 177.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 176.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 172.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 171.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 167.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 167.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 166.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 166.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 164.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 163.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 162.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 162.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 162.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 160.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 160.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 159.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 158.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 158.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 156.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 155.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 153.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 153.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 151.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 150.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 147.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 147.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 146.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 143.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 142.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 141.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 140.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 139.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 136.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 134.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 134.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 133.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 133.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 131.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 129.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 125.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 123.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 122.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 122.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 120.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 119.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 118.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 117.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 117.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 114.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 114.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 113.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 111.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 111.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 107.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 107.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 104.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 104.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 103.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 101.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 100.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 100.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 95.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 94.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 93.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 92.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 91.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 89.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 88.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 88.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 81.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 80.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 75.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 74.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 70.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 64.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 62.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 259.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 259.4
FF:10151-102I7 76 years, female 259.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 48.4
Pig sample Sample description nTPM
Amygdala
nTPM: 48.4
Samples: 4

Max nTPM: 61.5
Min nTPM: 37.3
Sample A Female 51.8
Sample B Female 61.5
Sample C Male 42.9
Sample D Male 37.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 44.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 44.2
Samples: 4

Max nTPM: 55.3
Min nTPM: 39.2
Sample A Male 41.8
Sample B Male 40.4
Sample C Female 55.3
Sample D Female 39.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.3
70429303 Antisense, RP_050614_01_D08, Mouse strain C57BL/6J (56 days, male) 4.3

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