MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:500.0 nTPM
HPA:500.0 nTPM
GTEx:350.7 nTPM
FANTOM5:1152.7 Scaled Tags Per Million
Pig:192.2 nTPM
Mouse:141.6 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 500.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 352.8
2019 Male, age 18, unknown 435.7
1830 Male, age 51, unknown 432.7
1833 Male, age 53, unknown 398.6
1870 Female, age 42, unknown 380.7
2411 Female, age 72, unknown 372.2
2828 Female, age 72, unknown 348.3
2666 Male, age 74, left hemisphere 341.9
2586 Male, age 75, left hemisphere 332.1
1827 Male, age 72, unknown 254.2
2219 Male, age 76, both hemispheres 231.6
Dorsal raphe nucleus
nTPM: 269.7
2750 Male, age 76, both hemispheres 465.4
2016 Female, age 72, unknown 249.0
1828 Male, age 53, unknown 247.7
2047 Male, age 72, unknown 206.9
2298 Female, age 72, unknown 179.4
Inferior colliculus
nTPM: 236.1
1890 Male, age 53, unknown 257.3
2849 Male, age 72, unknown 252.4
1848 Female, age 42, unknown 250.2
2097 Female, age 72, unknown 184.5
Median raphe nucleus
nTPM: 289.6
2220 Male, age 76, midline 289.6
Pedunculopontine tegmental nucleus
nTPM: 349.7
2338 Male, age 61, both hemispheres 391.5
2334 Male, age 80, both hemispheres 380.1
1921 Female, age 85, both hemispheres 277.5
Periaquaductal grey, anterior
nTPM: 228.4
2502 Female, age 75, unknown 272.5
1947 Male, age 18, unknown 212.5
1795 Male, age 51, unknown 200.3
Periaquaductal grey, dorsal
nTPM: 197.2
2464 Female, age 72, unknown 258.5
1831 Male, age 72, unknown 206.2
2850 Male, age 76, both hemispheres 166.4
1840 Male, age 53, unknown 157.7
Periaquaductal grey, lateral
nTPM: 206.5
2272 Male, age 74, both hemispheres 249.7
2053 Male, age 18, unknown 212.5
2140 Male, age 76, both hemispheres 157.2
Pretectal area
nTPM: 256.6
1815 Male, age 53, unknown 333.8
2007 Male, age 72, unknown 322.3
1817 Female, age 42, unknown 311.0
2316 Male, age 76, right hemisphere 293.7
2407 Male, age 75, both hemispheres 278.2
2825 Male, age 18, unknown 244.1
1944 Female, age 72, unknown 218.9
2667 Female, age 75, unknown 213.1
1816 Male, age 51, unknown 212.4
2273 Male, age 74, both hemispheres 201.1
2224 Female, age 72, unknown 194.0
Red nucleus
nTPM: 500.0
2823 Male, age 76, right hemisphere 599.8
1865 Male, age 51, unknown 557.7
1904 Male, age 53, unknown 552.8
2785 Male, age 18, unknown 537.8
2769 Male, age 72, unknown 525.9
2588 Male, age 74, left hemisphere 513.2
2503 Female, age 72, unknown 510.2
1821 Female, age 72, unknown 499.7
2227 Male, age 72, unknown 499.6
1954 Female, age 42, unknown 438.6
2584 Male, age 75, left hemisphere 389.3
2725 Female, age 75, unknown 375.0
Substantia nigra
nTPM: 281.4
2590 Female, age 75, unknown 346.6
1889 Female, age 72, unknown 331.3
2583 Male, age 75, right hemisphere 312.7
1851 Male, age 51, unknown 305.8
2409 Female, age 72, unknown 294.6
2699 Male, age 18, unknown 278.5
2665 Male, age 74, both hemispheres 261.2
1941 Male, age 53, unknown 238.1
1916 Female, age 42, unknown 227.8
2241 Male, age 72, unknown 217.2
Superior colliculus
nTPM: 293.8
1995 Male, age 72, unknown 384.2
1913 Female, age 42, unknown 382.4
2587 Male, age 74, left hemisphere 332.6
1895 Male, age 76, right hemisphere 304.9
1839 Male, age 51, unknown 301.0
2668 Female, age 75, unknown 289.9
1796 Male, age 53, unknown 255.4
2087 Female, age 72, unknown 237.8
2664 Male, age 75, both hemispheres 228.2
2261 Male, age 18, unknown 221.8
Ventral tegmental area
nTPM: 317.5
2223 Female, age 72, unknown 424.9
2410 Female, age 72, unknown 386.5
2218 Male, age 76, both hemispheres 299.3
2021 Male, age 53, unknown 279.8
1942 Male, age 51, unknown 265.0
1915 Female, age 42, unknown 249.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 350.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 350.7
Samples: 139

Max nTPM: 871.4
Min nTPM: 115.4
Std nTPM: 145.4
Median nTPM: 319.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 871.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 788.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 742.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 669.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 652.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 632.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 629.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 628.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 619.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 601.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 600.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1152.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1152.7
FF:10158-103A5 76 years, female 1152.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 192.2
Pig sample Sample description nTPM
Midbrain
nTPM: 192.3
Samples: 4

Max nTPM: 442.4
Min nTPM: 84.2
Sample A Female 442.4
Sample B Female 147.4
Sample C Male 95.0
Sample D Male 84.2
Periaqueductal gray
nTPM: 110.0
Samples: 3

Max nTPM: 132.5
Min nTPM: 91.4
Sample B Female 132.5
Sample C Male 91.4
Sample D Male 106.2
Substantia nigra
nTPM: 171.5
Samples: 4

Max nTPM: 222.6
Min nTPM: 132.3
Sample A Female 194.0
Sample B Female 137.2
Sample C Male 132.3
Sample D Male 222.6
Superior colliculi
nTPM: 155.3
Samples: 4

Max nTPM: 188.4
Min nTPM: 140.3
Sample A Female 188.4
Sample B Female 143.0
Sample C Male 140.3
Sample D Male 149.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 141.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.6
Samples: 4

Max nTPM: 142.8
Min nTPM: 140.3
Sample A Male 141.5
Sample B Male 142.8
Sample C Female 140.3
Sample D Female 141.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
70429303 Antisense, RP_050614_01_D08, Mouse strain C57BL/6J (56 days, male) 7.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.