BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:148.3 nTPM
HPA:148.3 nTPM
GTEx:118.1 nTPM
FANTOM5:691.3 Scaled Tags Per Million
Pig:272.1 nTPM
Mouse:422.1 nTPM
Allen mouse:14.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 148.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 23.2
2288 Male, age 75, left hemisphere 52.6
1781 Male, age 74, unknown 40.8
2846 Female, age 79, unknown 23.5
1857 Female, age 85, left hemisphere 22.2
1854 Male, age 80, left hemisphere 22.0
2289 Male, age 61, right hemisphere 12.6
2290 Female, age 72, unknown 12.4
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 71.0
2491 Male, age 75, both hemispheres 103.6
2568 Male, age 61, both hemispheres 95.0
2392 Female, age 94, both hemispheres 91.4
2284 Female, age 91, both hemispheres 89.6
2198 Male, age 80, both hemispheres 87.4
2645 Female, age 72, unknown 59.2
1956 Male, age 74, unknown 53.5
2292 Female, age 85, both hemispheres 32.6
2196 Female, age 79, unknown 26.8
Globus pallidus, externus
nTPM: 3.9
2772 Female, age 79, unknown 19.6
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
Globus pallidus, internus
nTPM: 5.3
1818 Male, age 74, unknown 33.0
2037 Male, age 80, right hemisphere 4.2
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 26.9
1856 Female, age 91, right hemisphere 84.6
2286 Male, age 75, left hemisphere 37.4
2824 Male, age 61, right hemisphere 30.3
2698 Female, age 72, unknown 18.7
1806 Female, age 85, left hemisphere 17.6
1783 Male, age 74, unknown 16.7
2732 Male, age 80, right hemisphere 9.5
2391 Female, age 94, left hemisphere 0.3
Nucleus basalis of Meynert
nTPM: 48.5
2821 Male, age 75, both hemispheres 120.2
2393 Male, age 80, right hemisphere 46.7
2484 Female, age 94, left hemisphere 27.0
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 148.3
2195 Female, age 85, both hemispheres 197.3
1812 Female, age 91, both hemispheres 168.2
2775 Male, age 80, right hemisphere 163.8
2029 Male, age 61, right hemisphere 146.5
1979 Male, age 74, unknown 65.9
Olfactory tubercle
nTPM: 142.7
2487 Female, age 94, left hemisphere 199.0
1998 Female, age 91, both hemispheres 152.0
2856 Male, age 75, right hemisphere 128.8
1846 Male, age 80, right hemisphere 90.9
Putamen
nTPM: 32.1
1937 Female, age 91, right hemisphere 78.9
1838 Male, age 80, right hemisphere 53.7
1829 Male, age 74, unknown 38.0
2466 Female, age 79, unknown 27.1
2647 Male, age 75, left hemisphere 17.2
2482 Female, age 94, left hemisphere 5.5
2489 Female, age 72, unknown 4.0
Septal nuclei
nTPM: 123.0
2629 Female, age 94, right hemisphere 212.9
1960 Male, age 74, unknown 153.8
2009 Female, age 91, both hemispheres 145.4
2031 Female, age 72, unknown 120.3
2059 Female, age 85, both hemispheres 110.3
2199 Male, age 80, right hemisphere 62.3
2394 Male, age 61, left hemisphere 56.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 118.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 107.1
Samples: 246

Max nTPM: 531.8
Min nTPM: 7.0
Std nTPM: 68.9
Median nTPM: 99.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 531.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 354.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 335.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 275.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 248.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 241.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 239.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 227.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 225.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 219.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 219.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 113.7
Samples: 246

Max nTPM: 494.2
Min nTPM: 10.1
Std nTPM: 64.3
Median nTPM: 114.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 494.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 491.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 268.8
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 242.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 227.9
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 225.9
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 224.4
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 223.7
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 223.1
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 221.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 218.2
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Brain - Putamen (basal ganglia)
Average nTPM: 118.1
Samples: 205

Max nTPM: 403.4
Min nTPM: 4.5
Std nTPM: 73.6
Median nTPM: 118.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 403.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 344.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 309.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 287.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 284.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 281.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 279.1
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 264.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 256.9
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 254.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 253.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 691.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 436.0
FF:10164-103B2 76 years, female 436.0
Globus pallidus
Scaled Tags Per Million: 256.4
FF:10175-103C4 60 years, female 411.2
FF:10161-103A8 76 years, female 101.7
Nucleus accumbens
Scaled Tags Per Million: 691.3
FF:10037-101F1 23-56 years, mixed 691.3
Putamen
Scaled Tags Per Million: 407.1
FF:10176-103C5 60 years, female 407.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 272.1
Pig sample Sample description nTPM
Caudate
nTPM: 127.4
Samples: 4

Max nTPM: 148.7
Min nTPM: 109.1
Sample A Female 148.7
Sample B Female 119.8
Sample C Male 109.1
Sample D Male 132.0
Putamen
nTPM: 136.1
Samples: 4

Max nTPM: 173.5
Min nTPM: 104.3
Sample A Female 142.9
Sample B Female 104.3
Sample C Male 173.5
Sample D Male 123.7
Septum
nTPM: 272.2
Samples: 4

Max nTPM: 508.7
Min nTPM: 162.2
Sample A Female 162.2
Sample B Female 164.7
Sample C Male 508.7
Sample D Male 253.0
Ventral pallidum
nTPM: 211.1
Samples: 4

Max nTPM: 457.1
Min nTPM: 110.7
Sample A Female 110.7
Sample B Female 153.6
Sample C Male 457.1
Sample D Male 122.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 422.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 184.1
Samples: 4

Max nTPM: 249.0
Min nTPM: 133.9
Sample A Male 141.6
Sample B Male 133.9
Sample C Female 249.0
Sample D Female 211.8
Septum
nTPM: 422.1
Samples: 4

Max nTPM: 445.2
Min nTPM: 395.3
Sample A Male 419.5
Sample B Male 445.2
Sample C Female 428.2
Sample D Female 395.3
Ventral forebrain
nTPM: 328.9
Samples: 4

Max nTPM: 352.1
Min nTPM: 309.5
Sample A Male 331.1
Sample B Male 323.0
Sample C Female 309.5
Sample D Female 352.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 14.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.6
69173415 Antisense, RP_050329_01_E10, Mouse strain C57BL/6J (56 days, male) 9.6
74819695 Antisense, RP_060315_02_H11, Mouse strain C57BL/6J (56 days, male) 7.7
Pallidum
Expression energy: 14.8
74819695 Antisense, RP_060315_02_H11, Mouse strain C57BL/6J (56 days, male) 15.1
69173415 Antisense, RP_050329_01_E10, Mouse strain C57BL/6J (56 days, male) 14.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.