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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:130.8 nTPM
HPA:130.8 nTPM
GTEx:160.2 nTPM
FANTOM5:52.0 Scaled Tags Per Million
Pig:40.7 nTPM
Mouse:94.3 nTPM
Allen mouse:10.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 130.8
Sample id Sample description nTPM
Amygdala
nTPM: 124.7
2514 Male, age 75, right hemisphere 152.2
2517 Female, age 94, left hemisphere 130.8
1987 Female, age 91, left hemisphere 124.4
2814 Male, age 76, right hemisphere 110.6
2695 Female, age 67, right hemisphere 105.3
Basal amygdala
nTPM: 130.8
2609 Male, age 75, right hemisphere 159.5
2243 Female, age 91, right hemisphere 137.2
2110 Male, age 80, left hemisphere 131.7
2685 Female, age 94, left hemisphere 123.9
1955 Male, age 76, both hemispheres 117.4
2827 Female, age 67, right hemisphere 114.8
Central amygdala
nTPM: 125.1
2239 Male, age 80, left hemisphere 131.7
2826 Female, age 94, left hemisphere 130.0
2515 Male, age 75, right hemisphere 128.8
1905 Male, age 76, both hemispheres 118.0
2701 Female, age 91, right hemisphere 117.0
Corticomedial amygdala
nTPM: 130.4
2428 Male, age 75, right hemisphere 146.4
2242 Female, age 91, right hemisphere 134.0
2829 Male, age 80, left hemisphere 130.3
2429 Female, age 94, left hemisphere 127.8
2535 Female, age 67, right hemisphere 125.9
2240 Male, age 76, both hemispheres 117.8
Lateral amygdala
nTPM: 130.6
2516 Male, age 75, right hemisphere 156.2
2256 Male, age 80, left hemisphere 141.3
2534 Female, age 94, left hemisphere 135.4
2255 Female, age 91, right hemisphere 128.8
2830 Female, age 67, right hemisphere 111.8
1883 Male, age 76, both hemispheres 109.8
Stria terminalis, bed nucleus
nTPM: 117.6
2201 Male, age 74, unknown 128.4
1974 Female, age 91, both hemispheres 114.5
2486 Female, age 94, both hemispheres 109.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 160.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 160.2
Samples: 152

Max nTPM: 374.9
Min nTPM: 10.4
Std nTPM: 61.6
Median nTPM: 158.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 374.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 343.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 338.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 287.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 282.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 276.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 272.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 266.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 263.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 262.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 262.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 259.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 258.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 245.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 242.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 240.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 238.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 236.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 235.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 234.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 230.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 229.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 222.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 219.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 215.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 213.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 212.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 211.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 209.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 209.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 203.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 202.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 201.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 199.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 199.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 196.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 196.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 196.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 194.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 193.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 193.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 192.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 189.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 188.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 187.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 187.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 185.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 184.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 183.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 179.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 177.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 177.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 175.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 173.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 173.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 172.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 172.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 172.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 170.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 170.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 170.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 169.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 169.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 168.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 167.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 167.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 166.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 166.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 165.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 164.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 164.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 163.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 162.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 160.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 159.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 159.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 157.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 153.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 153.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 152.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 152.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 150.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 149.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 147.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 147.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 147.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 146.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 143.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 141.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 141.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 140.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 140.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 138.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 138.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 138.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 138.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 136.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 136.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 135.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 134.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 131.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 130.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 130.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 129.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 129.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 127.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 124.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 122.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 120.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 120.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 119.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 119.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 118.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 117.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 117.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 115.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 114.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 112.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 112.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 108.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 108.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 107.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 106.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 104.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 102.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 102.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 102.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 96.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 96.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 95.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 95.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 93.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 90.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 90.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 89.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 88.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 88.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 87.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 83.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 80.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 79.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 75.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 75.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 75.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 75.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 72.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 66.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 65.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 55.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 42.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 38.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 10.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 52.0
FF:10151-102I7 76 years, female 52.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.7
Pig sample Sample description nTPM
Amygdala
nTPM: 40.7
Samples: 4

Max nTPM: 51.6
Min nTPM: 31.7
Sample A Female 51.6
Sample B Female 31.7
Sample C Male 37.4
Sample D Male 42.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 94.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 94.3
Samples: 4

Max nTPM: 122.1
Min nTPM: 81.1
Sample A Male 86.2
Sample B Male 81.1
Sample C Female 122.1
Sample D Female 87.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.4
71717155 Antisense, RP_050524_03_C10, Mouse strain C57BL/6J (56 days, male) 10.4
70228328 Antisense, RP_050524_03_C10, Mouse strain C57BL/6J (56 days, male) 6.9

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