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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:130.0 nTPM
HPA:130.0 nTPM
GTEx:40.6 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:31.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 130.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 122.9
2565 Male, age 75, midline 134.0
2194 Female, age 79, both hemispheres 128.7
1981 Female, age 72, midline 123.2
2048 Male, age 55, midline 116.7
2816 Male, age 47, midline 112.0
Cervical spinal cord, dorsal horn
nTPM: 121.8
2721 Male, age 90, both hemispheres 134.5
2297 Male, age 75, both hemispheres 134.4
1877 Male, age 55, unknown 124.0
2069 Male, age 47, both hemispheres 117.6
2173 Female, age 72, unknown 117.1
2296 Male, age 66, both hemispheres 102.9
Cervical spinal cord, ventral horn
nTPM: 130.0
2480 Male, age 75, both hemispheres 149.1
2809 Male, age 90, both hemispheres 136.7
2295 Male, age 66, both hemispheres 132.0
2820 Female, age 79, both hemispheres 129.7
2068 Male, age 55, unknown 126.9
2098 Female, age 72, unknown 105.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 40.6
Samples: 159

Max nTPM: 131.2
Min nTPM: 5.1
Std nTPM: 22.6
Median nTPM: 36.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 131.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 127.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 111.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 101.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 95.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 93.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 90.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 90.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 89.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 82.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 76.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 74.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 73.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 73.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 73.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 70.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 69.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 69.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 66.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 64.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 61.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 59.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 59.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 58.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 58.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 56.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 55.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 55.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 54.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 54.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 54.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 54.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 53.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 53.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 52.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 52.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 52.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 51.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 51.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 51.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 51.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 51.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 50.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 50.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 49.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 49.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 48.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 48.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 47.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 47.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 47.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 47.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 47.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 47.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 46.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 45.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 45.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 45.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 45.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 45.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 44.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 43.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 42.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 42.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 42.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 41.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 41.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 41.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 40.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 40.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 39.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 39.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 38.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 38.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 37.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 37.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 36.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 36.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 36.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 36.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 35.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 35.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 34.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 34.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 34.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 33.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 33.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 33.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 33.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 33.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 33.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 32.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 32.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 32.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 32.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 32.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 31.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 31.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 30.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 30.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 30.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 30.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 29.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 29.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 29.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 28.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 28.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 27.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 27.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 27.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 27.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 27.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 26.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 26.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 26.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 26.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 25.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 25.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 24.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 24.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 24.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 24.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 23.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 23.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 22.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 22.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 22.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 21.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 20.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 19.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 19.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 19.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 19.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 19.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 19.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 19.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 18.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 17.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 17.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 17.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 17.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 17.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 16.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 16.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 16.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 15.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 14.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 14.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 13.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 13.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 13.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 13.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 13.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 12.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 11.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 11.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 9.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 8.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 5.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 30.5
FF:10181-103D1 60 years, female 37.7
FF:10159-103A6 76 years, female 23.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 28.1
Samples: 4

Max nTPM: 33.0
Min nTPM: 23.7
Sample A Female 33.0
Sample B Female 23.7
Sample C Male 24.4
Sample D Male 31.3
Ventral spinal cord
nTPM: 31.8
Samples: 4

Max nTPM: 37.9
Min nTPM: 20.9
Sample A Female 33.9
Sample B Female 34.3
Sample C Male 37.9
Sample D Male 20.9

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