MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:168.8 nTPM
HPA:168.8 nTPM
GTEx:85.3 nTPM
FANTOM5:25.5 Scaled Tags Per Million
Pig:42.4 nTPM
Mouse:57.5 nTPM
Allen mouse:8.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 168.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.0
2219 Male, age 76, both hemispheres 164.4
2586 Male, age 75, left hemisphere 148.2
2666 Male, age 74, left hemisphere 140.7
2828 Female, age 72, unknown 123.3
1870 Female, age 42, unknown 122.8
2411 Female, age 72, unknown 122.4
1833 Male, age 53, unknown 121.6
1827 Male, age 72, unknown 118.6
1830 Male, age 51, unknown 115.8
2019 Male, age 18, unknown 92.3
Dorsal raphe nucleus
nTPM: 132.6
2047 Male, age 72, unknown 148.5
2750 Male, age 76, both hemispheres 141.5
2298 Female, age 72, unknown 128.1
1828 Male, age 53, unknown 127.4
2016 Female, age 72, unknown 117.6
Inferior colliculus
nTPM: 121.6
1848 Female, age 42, unknown 130.6
2849 Male, age 72, unknown 124.9
1890 Male, age 53, unknown 118.8
2097 Female, age 72, unknown 112.1
Median raphe nucleus
nTPM: 149.5
2220 Male, age 76, midline 149.5
Pedunculopontine tegmental nucleus
nTPM: 128.0
2334 Male, age 80, both hemispheres 154.9
1921 Female, age 85, both hemispheres 124.1
2338 Male, age 61, both hemispheres 105.1
Periaquaductal grey, anterior
nTPM: 168.8
1947 Male, age 18, unknown 213.3
1795 Male, age 51, unknown 153.8
2502 Female, age 75, unknown 139.2
Periaquaductal grey, dorsal
nTPM: 117.2
1840 Male, age 53, unknown 122.6
2850 Male, age 76, both hemispheres 119.5
2464 Female, age 72, unknown 119.3
1831 Male, age 72, unknown 107.5
Periaquaductal grey, lateral
nTPM: 115.1
2053 Male, age 18, unknown 121.6
2140 Male, age 76, both hemispheres 120.1
2272 Male, age 74, both hemispheres 103.5
Pretectal area
nTPM: 114.7
2825 Male, age 18, unknown 142.5
2224 Female, age 72, unknown 121.5
2667 Female, age 75, unknown 118.4
1817 Female, age 42, unknown 118.0
1944 Female, age 72, unknown 115.5
1816 Male, age 51, unknown 114.9
2316 Male, age 76, right hemisphere 111.8
1815 Male, age 53, unknown 111.3
2007 Male, age 72, unknown 107.3
2407 Male, age 75, both hemispheres 101.2
2273 Male, age 74, both hemispheres 99.9
Red nucleus
nTPM: 113.9
2725 Female, age 75, unknown 125.7
2584 Male, age 75, left hemisphere 123.0
2227 Male, age 72, unknown 121.2
2769 Male, age 72, unknown 120.0
2588 Male, age 74, left hemisphere 118.8
2503 Female, age 72, unknown 117.2
1954 Female, age 42, unknown 116.9
1821 Female, age 72, unknown 109.5
1865 Male, age 51, unknown 109.3
1904 Male, age 53, unknown 108.5
2823 Male, age 76, right hemisphere 103.8
2785 Male, age 18, unknown 93.3
Substantia nigra
nTPM: 122.8
1916 Female, age 42, unknown 136.5
1851 Male, age 51, unknown 131.2
2665 Male, age 74, both hemispheres 129.3
2699 Male, age 18, unknown 127.3
1941 Male, age 53, unknown 123.7
2241 Male, age 72, unknown 122.2
1889 Female, age 72, unknown 119.4
2583 Male, age 75, right hemisphere 116.0
2409 Female, age 72, unknown 111.3
2590 Female, age 75, unknown 110.9
Superior colliculus
nTPM: 117.3
2261 Male, age 18, unknown 139.7
2668 Female, age 75, unknown 124.2
1796 Male, age 53, unknown 123.8
1839 Male, age 51, unknown 121.2
1895 Male, age 76, right hemisphere 117.0
2087 Female, age 72, unknown 115.6
2664 Male, age 75, both hemispheres 110.1
2587 Male, age 74, left hemisphere 109.4
1995 Male, age 72, unknown 108.8
1913 Female, age 42, unknown 103.5
Ventral tegmental area
nTPM: 129.2
2218 Male, age 76, both hemispheres 141.5
1942 Male, age 51, unknown 131.6
1915 Female, age 42, unknown 129.2
2021 Male, age 53, unknown 129.0
2223 Female, age 72, unknown 123.6
2410 Female, age 72, unknown 120.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.3
Samples: 139

Max nTPM: 189.5
Min nTPM: 26.6
Std nTPM: 32.1
Median nTPM: 84.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 189.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 178.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 173.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 157.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 156.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 148.2
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 143.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 137.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 137.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 127.0
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 124.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.5
FF:10158-103A5 76 years, female 25.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.4
Pig sample Sample description nTPM
Midbrain
nTPM: 25.8
Samples: 4

Max nTPM: 37.0
Min nTPM: 11.2
Sample A Female 11.2
Sample B Female 37.0
Sample C Male 26.7
Sample D Male 28.3
Periaqueductal gray
nTPM: 35.6
Samples: 3

Max nTPM: 46.9
Min nTPM: 27.0
Sample B Female 33.0
Sample C Male 46.9
Sample D Male 27.0
Substantia nigra
nTPM: 42.4
Samples: 4

Max nTPM: 58.4
Min nTPM: 26.0
Sample A Female 53.4
Sample B Female 31.9
Sample C Male 58.4
Sample D Male 26.0
Superior colliculi
nTPM: 26.1
Samples: 4

Max nTPM: 37.0
Min nTPM: 15.6
Sample A Female 37.0
Sample B Female 15.6
Sample C Male 22.5
Sample D Male 29.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.6
Samples: 4

Max nTPM: 60.8
Min nTPM: 55.5
Sample A Male 57.0
Sample B Male 56.9
Sample C Female 55.5
Sample D Female 60.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.9
71717155 Antisense, RP_050524_03_C10, Mouse strain C57BL/6J (56 days, male) 8.9
70228328 Antisense, RP_050524_03_C10, Mouse strain C57BL/6J (56 days, male) 5.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.