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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:417.1 nTPM
HPA:417.1 nTPM
GTEx:309.9 nTPM
FANTOM5:145.1 Scaled Tags Per Million
Pig:245.5 nTPM
Mouse:965.4 nTPM
Allen mouse:37.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 417.1
Sample id Sample description nTPM
Amygdala
nTPM: 406.8
2814 Male, age 76, right hemisphere 472.2
2514 Male, age 75, right hemisphere 420.2
2517 Female, age 94, left hemisphere 394.4
2695 Female, age 67, right hemisphere 389.3
1987 Female, age 91, left hemisphere 358.0
Basal amygdala
nTPM: 378.5
2685 Female, age 94, left hemisphere 453.0
2110 Male, age 80, left hemisphere 414.3
1955 Male, age 76, both hemispheres 391.3
2827 Female, age 67, right hemisphere 368.9
2609 Male, age 75, right hemisphere 332.9
2243 Female, age 91, right hemisphere 310.6
Central amygdala
nTPM: 374.4
1905 Male, age 76, both hemispheres 412.6
2826 Female, age 94, left hemisphere 402.4
2239 Male, age 80, left hemisphere 385.7
2701 Female, age 91, right hemisphere 340.5
2515 Male, age 75, right hemisphere 330.8
Corticomedial amygdala
nTPM: 343.0
2429 Female, age 94, left hemisphere 394.9
2829 Male, age 80, left hemisphere 359.8
2240 Male, age 76, both hemispheres 344.9
2428 Male, age 75, right hemisphere 335.2
2535 Female, age 67, right hemisphere 331.5
2242 Female, age 91, right hemisphere 291.5
Lateral amygdala
nTPM: 417.1
2534 Female, age 94, left hemisphere 473.5
1883 Male, age 76, both hemispheres 447.5
2516 Male, age 75, right hemisphere 413.8
2256 Male, age 80, left hemisphere 411.2
2830 Female, age 67, right hemisphere 402.6
2255 Female, age 91, right hemisphere 354.0
Stria terminalis, bed nucleus
nTPM: 371.9
1974 Female, age 91, both hemispheres 396.5
2486 Female, age 94, both hemispheres 373.1
2201 Male, age 74, unknown 346.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 309.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 309.9
Samples: 152

Max nTPM: 770.0
Min nTPM: 13.6
Std nTPM: 125.7
Median nTPM: 287.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 770.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 690.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 676.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 597.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 577.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 570.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 556.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 544.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 529.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 529.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 521.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 514.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 510.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 501.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 497.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 489.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 475.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 467.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 465.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 459.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 452.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 452.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 442.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 436.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 431.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 420.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 419.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 409.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 401.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 399.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 397.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 397.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 393.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 392.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 392.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 388.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 385.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 379.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 372.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 370.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 369.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 363.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 354.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 354.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 349.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 347.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 347.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 342.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 342.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 339.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 336.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 336.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 335.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 334.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 334.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 332.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 332.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 331.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 331.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 330.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 329.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 328.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 324.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 319.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 319.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 318.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 317.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 315.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 312.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 308.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 306.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 301.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 297.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 293.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 292.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 287.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 286.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 286.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 285.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 284.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 283.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 281.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 281.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 280.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 274.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 270.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 269.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 268.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 268.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 267.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 267.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 266.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 263.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 262.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 255.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 252.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 249.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 247.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 247.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 246.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 243.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 240.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 237.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 237.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 231.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 231.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 228.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 227.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 227.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 226.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 226.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 225.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 220.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 220.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 219.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 214.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 211.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 211.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 211.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 208.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 207.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 203.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 200.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 199.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 198.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 197.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 196.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 195.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 192.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 192.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 191.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 189.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 188.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 187.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 181.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 181.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 178.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 171.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 167.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 161.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 160.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 158.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 154.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 152.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 152.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 133.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 128.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 126.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 118.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 100.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 81.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 13.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 145.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 145.1
FF:10151-102I7 76 years, female 145.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 245.5
Pig sample Sample description nTPM
Amygdala
nTPM: 245.5
Samples: 4

Max nTPM: 328.9
Min nTPM: 204.6
Sample A Female 328.9
Sample B Female 221.2
Sample C Male 204.6
Sample D Male 227.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 965.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 965.4
Samples: 4

Max nTPM: 1019.1
Min nTPM: 897.0
Sample A Male 1019.1
Sample B Male 897.0
Sample C Female 1014.4
Sample D Female 931.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 37.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 37.3
69015613 Antisense, RP_050315_01_C12, Mouse strain C57BL/6J (56 days, male) 37.3

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